View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5862-21 (Length: 61)

Name: Solexa-NF5862-21
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5862-21
Solexa-NF5862-21
[»] chr8 (1 HSPs)
chr8 (7-43)||(38944043-38944079)
[»] chr7 (1 HSPs)
chr7 (7-50)||(43415055-43415098)
[»] chr4 (1 HSPs)
chr4 (7-50)||(5460629-5460672)
[»] chr1 (1 HSPs)
chr1 (7-50)||(29379163-29379206)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 38944079 - 38944043
Alignment:
Q  7 aacctcttattatttgtttaagtcattgttttgaagt 43  Q
    |||||||||||||||||||||||||||||||||||||    
T  38944079 aacctcttattatttgtttaagtcattgttttgaagt 38944043  T

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Target: chr7 (Bit Score: 36; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 43415055 - 43415098
Alignment:
Q  7 aacctcttattatttgtttaagtcattgttttgaagttaaaaag 50  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  43415055 aacctcttattatttgtttaagtcatgattttgaagttaaaaag 43415098  T

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Target: chr4 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 5460672 - 5460629
Alignment:
Q  7 aacctcttattatttgtttaagtcattgttttgaagttaaaaag 50  Q
    ||||||||||||||||| |||||||| ||||||||  |||||||    
T  5460672 aacctcttattatttgtataagtcatggttttgaaaataaaaag 5460629  T

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Target: chr1 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 29379163 - 29379206
Alignment:
Q  7 aacctcttattatttgtttaagtcattgttttgaagttaaaaag 50  Q
    ||||||||||||||||| |||||||| ||||||||  |||||||    
T  29379163 aacctcttattatttgtataagtcatggttttgaaaataaaaag 29379206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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