View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5862-4 (Length: 148)
Name: Solexa-NF5862-4
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5862-4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 3780339 - 3780198
Alignment:
| Q |
7 |
aaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaag |
106 |
Q |
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| T |
3780339 |
aaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaag |
3780240 |
T |
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| Q |
107 |
gtgtatattgcggtgtacctttcttgtgttggccgtttcacg |
148 |
Q |
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| T |
3780239 |
gtgtatatagcggtgtacctttcttgtgttggccgtttcacg |
3780198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 3768061 - 3767928
Alignment:
| Q |
7 |
aaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaag |
106 |
Q |
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| T |
3768061 |
aaaggaaagatcgttagttgggtaccgcagaagaagatattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaag |
3767962 |
T |
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| Q |
107 |
gtgtatattgcggtgtacctttcttgtgttggcc |
140 |
Q |
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| T |
3767961 |
gtgtatattctggtatacctttcttatgttggcc |
3767928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 3789397 - 3789264
Alignment:
| Q |
7 |
aaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaag |
106 |
Q |
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| T |
3789397 |
aaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaag |
3789298 |
T |
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| Q |
107 |
gtgtatattgcggtgtacctttcttgtgttggcc |
140 |
Q |
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| T |
3789297 |
gtgtacatgccggtgtacctttcttgtgttggcc |
3789264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 3800710 - 3800843
Alignment:
| Q |
7 |
aaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaag |
106 |
Q |
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| T |
3800710 |
aaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggatggaattctaccatagaag |
3800809 |
T |
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| Q |
107 |
gtgtatattgcggtgtacctttcttgtgttggcc |
140 |
Q |
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| T |
3800810 |
gtgtacatgctggtgtacctttcttgtgttggcc |
3800843 |
T |
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