View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5862-7 (Length: 141)

Name: Solexa-NF5862-7
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5862-7
Solexa-NF5862-7
[»] chr8 (22 HSPs)
chr8 (1-85)||(45122905-45122989)
chr8 (3-85)||(40518486-40518568)
chr8 (20-85)||(8918939-8919003)
chr8 (91-140)||(40518588-40518637)
chr8 (29-85)||(1014044-1014100)
chr8 (13-85)||(30359520-30359592)
chr8 (91-140)||(30359277-30359326)
chr8 (91-140)||(30359615-30359664)
chr8 (91-140)||(41972164-41972213)
chr8 (28-85)||(45122559-45122616)
chr8 (29-85)||(3669989-3670045)
chr8 (28-85)||(147756-147812)
chr8 (91-136)||(147835-147880)
chr8 (25-82)||(3038105-3038161)
chr8 (91-140)||(3669693-3669742)
chr8 (52-85)||(6731856-6731889)
chr8 (91-140)||(9309361-9309410)
chr8 (91-140)||(9608751-9608800)
chr8 (91-140)||(18372359-18372408)
chr8 (91-140)||(43398174-43398223)
chr8 (91-140)||(45122160-45122209)
chr8 (33-85)||(18372429-18372481)
[»] chr2 (24 HSPs)
chr2 (3-85)||(35580560-35580642)
chr2 (3-85)||(7598512-7598594)
chr2 (1-82)||(36785741-36785821)
chr2 (3-85)||(28531486-28531566)
chr2 (3-85)||(38796393-38796476)
chr2 (20-85)||(42514934-42514998)
chr2 (48-85)||(40679801-40679838)
chr2 (91-140)||(40733523-40733572)
chr2 (32-85)||(40733813-40733866)
chr2 (29-85)||(5542798-5542854)
chr2 (29-85)||(14745466-14745522)
chr2 (3-85)||(6422019-6422102)
chr2 (91-140)||(962604-962653)
chr2 (91-140)||(6712982-6713031)
chr2 (91-140)||(7598615-7598664)
chr2 (91-140)||(42514655-42514704)
chr2 (29-85)||(3673012-3673068)
chr2 (96-136)||(9231260-9231300)
chr2 (96-140)||(40163476-40163520)
chr2 (91-140)||(28531417-28531466)
chr2 (91-140)||(38796321-38796370)
chr2 (101-137)||(28254218-28254254)
chr2 (97-136)||(28254344-28254383)
chr2 (54-85)||(30323417-30323448)
[»] chr5 (22 HSPs)
chr5 (20-85)||(13415934-13415999)
chr5 (29-85)||(9498421-9498477)
chr5 (29-84)||(6500752-6500807)
chr5 (4-136)||(38427461-38427599)
chr5 (90-140)||(9498757-9498807)
chr5 (3-85)||(13785781-13785863)
chr5 (96-140)||(41632793-41632837)
chr5 (91-140)||(36568670-36568719)
chr5 (25-85)||(26074535-26074595)
chr5 (91-140)||(300965-301014)
chr5 (4-85)||(3295191-3295271)
chr5 (91-140)||(18603223-18603272)
chr5 (91-140)||(24489307-24489356)
chr5 (48-85)||(24489376-24489413)
chr5 (91-140)||(26074324-26074373)
chr5 (44-85)||(26074957-26074998)
chr5 (91-139)||(26074250-26074298)
chr5 (33-85)||(31509555-31509607)
chr5 (96-140)||(34753128-34753172)
chr5 (96-140)||(41635294-41635338)
chr5 (97-140)||(26075265-26075308)
chr5 (97-136)||(42524729-42524767)
[»] chr3 (16 HSPs)
chr3 (14-85)||(22304482-22304554)
chr3 (3-85)||(21832515-21832596)
chr3 (91-140)||(33175767-33175816)
chr3 (3-85)||(8328282-8328364)
chr3 (28-85)||(32462734-32462791)
chr3 (3-85)||(54017991-54018073)
chr3 (4-85)||(9240053-9240135)
chr3 (91-140)||(21832446-21832495)
chr3 (91-140)||(25755400-25755449)
chr3 (91-140)||(37726510-37726559)
chr3 (91-140)||(39914258-39914307)
chr3 (91-140)||(43346894-43346943)
chr3 (91-140)||(49336790-49336839)
chr3 (96-140)||(3135176-3135220)
chr3 (96-140)||(12114665-12114709)
chr3 (54-85)||(42342265-42342296)
[»] chr1 (20 HSPs)
chr1 (29-85)||(44290631-44290687)
chr1 (20-85)||(30630810-30630875)
chr1 (3-85)||(1188403-1188483)
chr1 (14-85)||(22077667-22077737)
chr1 (20-85)||(66261-66327)
chr1 (91-140)||(22077598-22077647)
chr1 (32-85)||(48588661-48588714)
chr1 (13-82)||(26661700-26661770)
chr1 (3-85)||(47379956-47380038)
chr1 (33-86)||(3537494-3537547)
chr1 (33-85)||(3537320-3537372)
chr1 (29-85)||(50051824-50051880)
chr1 (23-85)||(34364846-34364908)
chr1 (91-140)||(3550726-3550775)
chr1 (91-140)||(5320068-5320117)
chr1 (20-85)||(22077294-22077358)
chr1 (91-140)||(24132088-24132137)
chr1 (91-140)||(34364513-34364562)
chr1 (91-140)||(41157381-41157430)
chr1 (13-85)||(41184198-41184270)
[»] scaffold0391 (3 HSPs)
scaffold0391 (3-85)||(1281-1363)
scaffold0391 (28-85)||(3160-3217)
scaffold0391 (20-85)||(1473-1538)
[»] chr4 (22 HSPs)
chr4 (3-85)||(20826121-20826203)
chr4 (91-140)||(39792961-39793010)
chr4 (28-81)||(41707340-41707393)
chr4 (3-82)||(54108819-54108898)
chr4 (32-85)||(18932930-18932983)
chr4 (3-80)||(22028163-22028240)
chr4 (3-85)||(49076621-49076705)
chr4 (97-140)||(54741279-54741322)
chr4 (1-84)||(2740971-2741056)
chr4 (91-136)||(3244556-3244601)
chr4 (20-85)||(45489505-45489570)
chr4 (91-140)||(2740706-2740755)
chr4 (91-140)||(2741077-2741126)
chr4 (1-78)||(3244628-3244705)
chr4 (103-140)||(3271802-3271839)
chr4 (91-140)||(16888917-16888966)
chr4 (91-140)||(16889637-16889686)
chr4 (91-140)||(34646750-34646799)
chr4 (91-140)||(36629243-36629292)
chr4 (34-85)||(36629172-36629223)
chr4 (50-85)||(44620608-44620643)
chr4 (50-85)||(44621374-44621409)
[»] chr6 (17 HSPs)
chr6 (9-85)||(10074163-10074239)
chr6 (12-83)||(2975465-2975536)
chr6 (1-85)||(2579280-2579367)
chr6 (3-85)||(2579664-2579747)
chr6 (20-82)||(10073789-10073851)
chr6 (24-85)||(16107986-16108046)
chr6 (100-140)||(2975567-2975607)
chr6 (29-85)||(29518850-29518905)
chr6 (32-79)||(2378059-2378106)
chr6 (55-85)||(2578617-2578647)
chr6 (91-140)||(3409265-3409314)
chr6 (91-140)||(16108069-16108118)
chr6 (91-140)||(17135172-17135221)
chr6 (91-140)||(35210210-35210259)
chr6 (96-140)||(10074094-10074138)
chr6 (54-85)||(12092207-12092238)
chr6 (98-137)||(33605667-33605706)
[»] chr7 (23 HSPs)
chr7 (3-85)||(48243252-48243334)
chr7 (20-84)||(1085425-1085491)
chr7 (90-140)||(34218137-34218187)
chr7 (20-82)||(40094569-40094630)
chr7 (29-85)||(14681438-14681495)
chr7 (3-84)||(37345820-37345901)
chr7 (96-139)||(118405-118448)
chr7 (3-74)||(8128288-8128359)
chr7 (3-65)||(47129377-47129439)
chr7 (91-140)||(28301646-28301695)
chr7 (96-140)||(6054571-6054615)
chr7 (29-85)||(7553953-7554008)
chr7 (53-85)||(28300373-28300405)
chr7 (20-85)||(30244619-30244684)
chr7 (20-85)||(30245412-30245477)
chr7 (20-83)||(45434554-45434619)
chr7 (3-85)||(45697816-45697896)
chr7 (96-141)||(14681521-14681566)
chr7 (91-140)||(16569202-16569251)
chr7 (91-140)||(16596411-16596460)
chr7 (91-140)||(30245500-30245549)
chr7 (49-85)||(30245024-30245060)
chr7 (96-140)||(45434647-45434691)
[»] scaffold0734 (1 HSPs)
scaffold0734 (29-85)||(5705-5760)
[»] scaffold0171 (2 HSPs)
scaffold0171 (53-85)||(17631-17663)
scaffold0171 (91-141)||(17558-17608)
[»] scaffold0078 (1 HSPs)
scaffold0078 (29-85)||(5284-5340)
[»] scaffold0702 (1 HSPs)
scaffold0702 (32-79)||(320-367)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 8e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 45122905 - 45122989
Alignment:
Q  1 cagagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||| || |||||| |||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||| |||||||||    
T  45122905 cagagaaaccagcaacgacgatacaagcaagtaagagcttccgcttgaagggggaacatgatgaatagatggacttacacttgag 45122989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 40518486 - 40518568
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||||| |||||||||||||||||| |||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  40518486 gagaaaccagcaacgacgatacaagcaagtaagagcttccacttgaggggggagcatgatgaattgatggactcacacttgag 40518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 8919003 - 8918939
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||| |||| |||| |||  ||||||| |||||||||||||||||||||||||||||    
T  8919003 gatacaagcaagttagagcttccgcttaaaggggga-catgatgaatagatggactcacacttgag 8918939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 40518588 - 40518637
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  40518588 tgtgagttatatgtcccacatcagatagaaaagtaaaggttgaacacctt 40518637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 1014100 - 1014044
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| |||||||| ||||||||| ||||||||||||||||||    
T  1014100 aagtaagagcttccgcttgaagggggagtatgatgaattgatggactcacacttgag 1014044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 30359520 - 30359592
Alignment:
Q  13 caacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||| || ||| |||||| |||| |||| |||||||||||||| ||| ||||||||||||||||||    
T  30359520 caacgacgataaaaccaattaagagcttccgcttgaagggggagcatgataaattgatggactcacacttgag 30359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 30359277 - 30359326
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||||||||||||||||    
T  30359277 tgtgagttatatgtctcacatcggataaaagagtaaatgttgaacacctt 30359326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 30359615 - 30359664
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  30359615 tgtgagttatatgtctcacatcagataaaagagtaaaagttgaacacctt 30359664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 41972164 - 41972213
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  41972164 tgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacacctt 41972213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 45122559 - 45122616
Alignment:
Q  28 caagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||| |||| || | ||||||||||||||||||||| | |||||||||||||    
T  45122559 caagtaagagcttccgctggaagggggagcatgatgaatagaagaactcacacttgag 45122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 3669989 - 3670045
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||  |||| |||| ||||||||||||| ||||||||||||||||||    
T  3669989 aagtaagagcttctgcttgaagggtgagcatgatgaattgatggactcacacttgag 3670045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 147756 - 147812
Alignment:
Q  28 caagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||| |||| |||  ||||||||| |||||||| ||||||||||||||||||    
T  147756 caagtaagagcttccgcttaaagggggagc-tgatgaattgatggactcacacttgag 147812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 147835 - 147880
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    |||| |||||||||| |||||| |||| ||||||||||||||||||    
T  147835 tgtgagttatatgtcccacatctgataaaaaagtaaatgttgaaca 147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 3038161 - 3038105
Alignment:
Q  25 aagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    ||||||||||||| |||| |||| |||||||||  ||||||| |||||||||||||||    
T  3038161 aagcaagtaagagcttccgcttg-agggggagctcgatgaattgatggactcacactt 3038105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 3669693 - 3669742
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  3669693 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacacctt 3669742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 6731856 - 6731889
Alignment:
Q  52 gggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||||||||||||| |||||    
T  6731856 gggagcatgatgaatagatggactcacatttgag 6731889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 9309361 - 9309410
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||| || |||||||||||||||||||    
T  9309361 tgtgagttatatgtcccacatcggataaaagagtaaatgttgaacacctt 9309410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 9608751 - 9608800
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| || ||| |||||||||||||| ||||||||||||    
T  9608751 tgtgagttatatgtcccatatcggatagaaaagtaaaggttgaacacctt 9608800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 18372408 - 18372359
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||| ||||||||||||    
T  18372408 tgtgagttatatgtctcacatcggataaaatagtaaaggttgaacacctt 18372359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 43398223 - 43398174
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||| ||||| ||| |||||||||||||| ||||||||||||    
T  43398223 tgtgagttatatatctcatatcggatagaaaagtaaaggttgaacacctt 43398174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 45122209 - 45122160
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||| ||||||||||||    
T  45122209 tgtgagttatatgtctcacatcggataaaatagtaaaggttgaacacctt 45122160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 18372481 - 18372429
Alignment:
Q  33 aagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||| ||||||||| |||||||||| ||| ||  ||||||||||||||||||    
T  18372481 aagagcttccccttgaagggggagcacgataaagtgatggactcacacttgag 18372429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 1e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 35580642 - 35580560
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||||||||  |||| ||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  35580642 gagaaaccaacaacgacaatacgagcaagtaaaagcttccccttgaaggaggagcatgatgaatagatggactcacacttgag 35580560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 7598512 - 7598594
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaa-gagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| ||||||||| ||||||||||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||||||||    
T  7598512 gagaaaccaacaacgacgatacaagcaagtaaagagcttccgcttgaaggggg-gcatgatgaatagatggactcacacttgag 7598594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36785821 - 36785741
Alignment:
Q  1 cagagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    |||||||| || |||||| ||||||| |||||||||| |||| |||| |||||||||||||||||| |||||||||||||||    
T  36785821 cagagaaaccagcaacgacgatacaaccaagtaagagcttccgcttg-agggggagcatgatgaattgatggactcacactt 36785741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 28531566 - 28531486
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||| ||||||||||||||| || |||| |||| |  ||||||||||||||  ||||||||||||||||||    
T  28531566 gagaaagcaacaacgacgatacaagcaagtaatagcttccacttgaa--gggagcatgatgaactgatggactcacacttgag 28531486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 38796476 - 38796393
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatg-aatagatggactcacacttgag 85  Q
    |||||| || |||||| |||||||||||||||||  |||| |||| ||||||||||||||| || |||||||||||||||||||    
T  38796476 gagaaaccagcaacgacgatacaagcaagtaagatcttccgcttgaagggggagcatgatgaaaaagatggactcacacttgag 38796393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 42514934 - 42514998
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||| |||| |||| || |||||||||||||||||||||||||||| |||||    
T  42514934 gatacaagcaagtaagagcttccgcttg-agagggagcatgatgaatagatggactcacatttgag 42514998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 40679838 - 40679801
Alignment:
Q  48 gagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40679838 gagggggagcatgatgaatagatggactcacacttgag 40679801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 40733523 - 40733572
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  40733523 tgtgagttatatgtcccacatcagataaaaaagtaaatgttgaacacctt 40733572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 40733813 - 40733866
Alignment:
Q  32 taagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||| |||| |||||||||||||||||| ||||||||||||||||||    
T  40733813 taagagcttccgcttgaagggggagcatgatgaattgatggactcacacttgag 40733866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 5542854 - 5542798
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||| |||| |||| |||| ||||| |||||||||||||||||||||||||||||||    
T  5542854 aagttagagcttccgcttgaaggggaagcatgatgaatagatggactcacacttgag 5542798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 14745522 - 14745466
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| ||||||||||||||||||||||| ||||| |||||||    
T  14745522 aagtaagagcttccgcttgaagggggagcatgatgaatagatgtactcaaacttgag 14745466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 6422019 - 6422102
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagaga-ttccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || ||||||  |||||||| ||||| | | |||| |||| |||||||||||||||||| ||||||||||||||||||    
T  6422019 gagaaaccagcaacgacaatacaagctagtaaaaaacttccgcttgaagggggagcatgatgaattgatggactcacacttgag 6422102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 962604 - 962653
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  962604 tgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacacctt 962653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 6712982 - 6713031
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||||||||||||||||    
T  6712982 tgtgagttatatgtctcacatcggataaaacagtaaatgttgaacacctt 6713031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 7598615 - 7598664
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  7598615 tgtgagttatatgtcccacatcagataaaaaagtaaaggttgaacacctt 7598664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 42514655 - 42514704
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||||||||    
T  42514655 tgtgagttatatgtcctacatcagatagaaaagtaaaggttgaacacctt 42514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 3673012 - 3673068
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||| |||| || ||||||||||||||| ||||||||||||||||||    
T  3673012 aagtaaaagcttccgcttgaagagggagcatgatgaattgatggactcacacttgag 3673068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 9231260 - 9231300
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  9231260 gttatatgtctcatatcagatagaaaagtaaaggttgaaca 9231300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 40163520 - 40163476
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||    
T  40163520 gttatatgtcccacatcggatagaaaagtaaaggttgaacacctt 40163476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 28531466 - 28531417
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||| ||| ||||||||||||    
T  28531466 tgtgagttatatgtcccacatcggatagaaaagcaaaggttgaacacctt 28531417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 38796370 - 38796321
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||| || |||||||||||||||||||    
T  38796370 tgtgagttatatgtcccacatcggataaaacagtaaatgttgaacacctt 38796321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 28254254 - 28254218
Alignment:
Q  101 atgtctcacatcagatagaaaagtaaatgttgaacac 137  Q
    |||||||||||| |||||||||||||| |||||||||    
T  28254254 atgtctcacatcggatagaaaagtaaaggttgaacac 28254218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 28254383 - 28254344
Alignment:
Q  97 ttatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    ||||||||| |||||| |||||||||||||| ||||||||    
T  28254383 ttatatgtcccacatcggatagaaaagtaaaggttgaaca 28254344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 85
Target Start/End: Original strand, 30323417 - 30323448
Alignment:
Q  54 gagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||| ||||||||||||||||||    
T  30323417 gagcatgatgaattgatggactcacacttgag 30323448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 5e-20; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 13415999 - 13415934
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||    
T  13415999 gatacaagcaagtaagagcttccgcttgaagggggagcatgctgaatagatggactcacacttgag 13415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 9498477 - 9498421
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  9498477 aagtaagagcttccccttgaagggggagcatgatgaatagatggactcacacttgag 9498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 6500752 - 6500807
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttga 84  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  6500752 aagtaagagcttccccttgaagggggagcatgatgaatagatggactcacacttga 6500807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 38427461 - 38427599
Alignment:
Q  4 agaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgagtaaga------tgtgggt 97  Q
    ||||| || |||||| |||||||||||||||||| |||| |||| | |||| |||| |||||||||||||||||||||||||   ||      |||| ||    
T  38427461 agaaaccagcaacgacgatacaagcaagtaagagcttcctcttgaaaggggtgcatcatgaatagatggactcacacttgagggggagtgttgtgtgagt 38427560  T
Q  98 tatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    |||||||| |||||  |||||||||||||| ||||||||    
T  38427561 tatatgtcccacattggatagaaaagtaaaggttgaaca 38427599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 9498807 - 9498757
Alignment:
Q  90 atgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  9498807 atgtgagttatatgtctcacatcagatagaatagtaaaggttgaacacctt 9498757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 13785863 - 13785781
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| ||||   |||||||||||||||||| |||| |||| ||||| | |||||||||||||| |||||||| |||||    
T  13785863 gagaaagcagcaacaccgatacaagcaagtaagagcttccgcttgaaggggaaacatgatgaatagatagactcacatttgag 13785781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 41632793 - 41632837
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  41632793 gttatatgtctcacatcggatagaaaagtaaaggttgaacacctt 41632837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 36568719 - 36568670
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  36568719 tgtgagttatatgtcccacatcggatagaaaagtaaaagttgaacacctt 36568670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 26074535 - 26074595
Alignment:
Q  25 aagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||| |||| |||| ||| | |||||||| ||| ||||||||||||||||||    
T  26074535 aagcaagtaagagcttccacttgaaggagtagcatgatcaattgatggactcacacttgag 26074595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 300965 - 301014
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||||||||||| ||||||||||| || |||||| |||||| |||||    
T  300965 tgtgggttatatgtcccacatcagataaaacagtaaaggttgaatacctt 301014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3295271 - 3295191
Alignment:
Q  4 agaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||| |||||  |||||||||||||||||| |||| |||  |||||||||| ||  ||  ||||||||||||||||||    
T  3295271 agaaagcagcaacggcgatacaagcaagtaagagcttccgctt-aagggggagcacgaaaaagtgatggactcacacttgag 3295191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 18603272 - 18603223
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  18603272 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacacctt 18603223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 24489356 - 24489307
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||||||||| ||| ||| ||||||||    
T  24489356 tgtgagttatatgtcccacatcagatagaaaagaaaaggttaaacacctt 24489307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 24489413 - 24489376
Alignment:
Q  48 gagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  24489413 gaggggtagcatgatgaattgatggactcacacttgag 24489376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 26074324 - 26074373
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||||||||||||| ||||  |||||||||||    
T  26074324 tgtgagttatatgtcccacatcagatagaaaactaaagattgaacacctt 26074373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 26074998 - 26074957
Alignment:
Q  44 cttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||| ||||||||| |||||||| ||||||||||||||||||    
T  26074998 cttgaagggggagcttgatgaattgatggactcacacttgag 26074957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 26074298 - 26074250
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacct 139  Q
    |||| |||||||||| |||||| |||| ||||||||| |||||||||||    
T  26074298 tgtgagttatatgtcacacatcggataaaaaagtaaaggttgaacacct 26074250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31509555 - 31509607
Alignment:
Q  33 aagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||| |||| ||||  ||| ||||||||||||| ||||||||||||||||||    
T  31509555 aagagcttccgcttgaggggtgagcatgatgaattgatggactcacacttgag 31509607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 34753172 - 34753128
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||    
T  34753172 gttatatgtcccacattggatagaaaagtaaaagttgaacacctt 34753128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 41635338 - 41635294
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||||| || ||||||||| || |||||||||||||||||||    
T  41635338 gttatatgtttcccatcagataaaagagtaaatgttgaacacctt 41635294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 26075308 - 26075265
Alignment:
Q  97 ttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||||||||| |||| || |||||| ||||||||||||    
T  26075308 ttatatgtctcacatcggataaaagagtaaaggttgaacacctt 26075265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 42524729 - 42524767
Alignment:
Q  97 ttatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  42524729 ttatatgtctcacatcggatagaaaagtaaa-gttgaaca 42524767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 2e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 22304482 - 22304554
Alignment:
Q  14 aacgaagatacaagcaa-gtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||| ||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||    
T  22304482 aacgacgatacaagcaaagtaagagcttccgcttgaagggggagcatgatgaatagatggactcacacttgag 22304554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 21832596 - 21832515
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||||| |||||||||||||| ||| ||||  ||| | |||||||||||||||||||||||||||||||||||    
T  21832596 gagaaaccagcaacgacgatacaagcaagtatgagcttccatttg-atggggagcatgatgaatagatggactcacacttgag 21832515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 33175816 - 33175767
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  33175816 tgtgagttatatgtctcacatcagatagaaaagtaaaggttgaacacctt 33175767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 8328282 - 8328364
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| ||||||||  |||||||||||||||||| |||| |||| ||||||||   |||| || ||||||||||||||||||    
T  8328282 gagaaaccaacaacggtgatacaagcaagtaagagcttccgcttgaagggggagatcgatgcattgatggactcacacttgag 8328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 32462791 - 32462734
Alignment:
Q  28 caagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||| || | |||| |||||||||||||||||| ||||||||||||||||||    
T  32462791 caagtaagagctttcgcttgaagggggagcatgatgaattgatggactcacacttgag 32462734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 54018073 - 54017991
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaa-gagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||||||   ||||||||||||||| ||| |||| |||| ||||||| ||||||||| |||||||||||||||||||    
T  54018073 gagaaaccaacaacagtgatacaagcaagtaaagagcttccgcttg-agggggaacatgatgaaaagatggactcacacttgag 54017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 9240053 - 9240135
Alignment:
Q  4 agaaagcaacaacgaagatacaa-gcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||| |||||| ||||||| ||||||||||| |||| ||||  ||| |||||| | |||| ||||||||||||||||||    
T  9240053 agaaagcagcaacgatgatacaaagcaagtaagagtttccgcttgaggggagagcataacgaatggatggactcacacttgag 9240135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 21832495 - 21832446
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||  |||||||||||||| ||||||||||||    
T  21832495 tgtgagttatatgtcccacattggatagaaaagtaaaggttgaacacctt 21832446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 25755400 - 25755449
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||||||||||||||| || |||||| |||||| |||||    
T  25755400 tgtgagttatatgtctcacatcagataaaagagtaaaggttgaatacctt 25755449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 37726510 - 37726559
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || ||||||||||||| |||||    
T  37726510 tgtgagttatatgtctcacatcggataaaatagtaaatgttgaatacctt 37726559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 39914258 - 39914307
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||||||||||||||| || |||| | ||||||||||||    
T  39914258 tgtgagttatatgtctcacatcagataaaacagtagaggttgaacacctt 39914307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 43346943 - 43346894
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  43346943 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacacctt 43346894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 49336839 - 49336790
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||| |||||||||||| |||||||||||||| ||||| ||||||    
T  49336839 tgtgagttacatgtctcacatcggatagaaaagtaaaggttgaccacctt 49336790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 3135220 - 3135176
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||| |||||| |||| || |||||||||||||||||||    
T  3135220 gttatatgtcccacatcggataaaatagtaaatgttgaacacctt 3135176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 12114709 - 12114665
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||| || |||||| |||||||||||||| ||||||||||||    
T  12114709 gttatatatcccacatcggatagaaaagtaaaggttgaacacctt 12114665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 85
Target Start/End: Complemental strand, 42342296 - 42342265
Alignment:
Q  54 gagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||| ||||||||||||||||||    
T  42342296 gagcatgatgaattgatggactcacacttgag 42342265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 44290687 - 44290631
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  44290687 aagtaagagcttccccttgaagggggagcatgatgaatagatggactcacacttgag 44290631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 30630875 - 30630810
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||| | |||| |||| |||||||||||||||||| ||||||||||||||||||    
T  30630875 gatacaagcaagtaagtgcttcctcttgaagggggagcatgatgaattgatggactcacacttgag 30630810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 1188483 - 1188403
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||||   || ||||||||||||||| |||| |||| ||||  |||||||||||| ||||||||||||||||||    
T  1188483 gagaaagcaacaacattgacacaagcaagtaagagcttccacttgaaggg--agcatgatgaattgatggactcacacttgag 1188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 22077737 - 22077667
Alignment:
Q  14 aacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||| ||||||||||| |||||| |||| |||| | ||||||||||||||||| |||||||||||||||||    
T  22077737 aacgacgatacaagcaattaagagcttccgcttg-atggggagcatgatgaatacatggactcacacttgag 22077667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 66327 - 66261
Alignment:
Q  20 gatacaagcaag-taagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||| |||||| |||| ||||  |||||| |||||||||||||||||||||||||||||    
T  66327 gatacaagcaagataagagcttccgcttgatgggggaacatgatgaatagatggactcacacttgag 66261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 22077647 - 22077598
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  22077647 tgtgagttatatgtctcacatcggatagaaaagtaaaggttgaacacctt 22077598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 48588714 - 48588661
Alignment:
Q  32 taagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||    
T  48588714 taagagcttccgcttgaaggggtagcatgatgaatagatggactcacacttgag 48588661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 26661770 - 26661700
Alignment:
Q  13 caacgaagatacaagcaa-gtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    |||||| |||||| |||| ||||||| |||| |||| |||| ||| |||||||||||||||||||||||||    
T  26661770 caacgacgatacatgcaaagtaagagcttccgcttgaagggagagtatgatgaatagatggactcacactt 26661700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 47380038 - 47379956
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||||| |||||||||||||||||  |||| ||||  ||||||||| ||||||| | |||||| ||| |||||    
T  47380038 gagaaagcagcaacgacgatacaagcaagtaagaacttccgcttgaggggggagcacgatgaattgttggacttacatttgag 47379956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 3537547 - 3537494
Alignment:
Q  33 aagagattccccttggagggggagcatgatgaatagatggactcacacttgagt 86  Q
    ||||| |||| |||| |||||||||||||||| | |||||||||||||||||||    
T  3537547 aagagcttccgcttgaagggggagcatgatgatttgatggactcacacttgagt 3537494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 3537372 - 3537320
Alignment:
Q  33 aagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||| |||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  3537372 aagagcttccgcttgaagggggagcaagatgaattgatggactcacacttgag 3537320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 50051880 - 50051824
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||  |||| ||||||||||||||||||  |||||||||||||||||    
T  50051880 aagtaagagcttctgcttgaagggggagcatgatgaattaatggactcacacttgag 50051824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 34364846 - 34364908
Alignment:
Q  23 acaagcaagtaagagattccccttggagggggagcatgatgaata-gatggactcacacttgag 85  Q
    ||||||||||||||| ||||  ||| ||||||||||||||||| | ||||||||||||||||||    
T  34364846 acaagcaagtaagagcttccgattg-agggggagcatgatgaaaaagatggactcacacttgag 34364908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 3550726 - 3550775
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  3550726 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacacctt 3550775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 5320117 - 5320068
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||  |||||| |||||||||||||| ||||||||||||    
T  5320117 tgtgagttatatgttccacatcggatagaaaagtaaaagttgaacacctt 5320068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 22077358 - 22077294
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||| || | |||| |  | ||||||||||||||||||||| ||||||||||    
T  22077358 gatacaagcaagtaagagctttcgcttg-atagcgagcatgatgaatagatggacacacacttgag 22077294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 24132137 - 24132088
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| | |||| |||||||||||||| ||||||||||||    
T  24132137 tgtgagttatatgtccctcatcggatagaaaagtaaaggttgaacacctt 24132088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 34364513 - 34364562
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||| ||||||||||||    
T  34364513 tgtgagttatatgtctcacatcggataaaatagtaaaggttgaacacctt 34364562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 41157381 - 41157430
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  41157381 tgtgagttatatgtcccacatcagataaaagagtaaaagttgaacacctt 41157430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 41184270 - 41184198
Alignment:
Q  13 caacgaagatacaagcaagtaa-gagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| ||||||| ||||||| ||| |||| |||| |||||||||| ||||||  ||||||||||||||||||    
T  41184270 caacgacgatacaaacaagtaaagagcttccgcttg-agggggagcacgatgaagtgatggactcacacttgag 41184198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 47; Significance: 3e-18; HSPs: 3)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 1363 - 1281
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||||| |||||||||||||||||| |||| || | |||||||||||||| || |||||||||||||||||||    
T  1363 gagaaaccagcaacgacgatacaagcaagtaagagcttccgctcgaagggggagcatgatcaaaagatggactcacacttgag 1281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 3217 - 3160
Alignment:
Q  28 caagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||| |||| |||| |||||||||||||||| | ||||||||||||||||||    
T  3217 caagtaagagcttccgcttgaagggggagcatgatgagttgatggactcacacttgag 3160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 1538 - 1473
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||||| || || | || | |||||||||||||||||| ||| ||||||||||||||    
T  1538 gatacaagcaagtaaaagctttcgctggaagggggagcatgatgaatcgattgactcacacttgag 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 20826121 - 20826203
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||||  ||||||||||||||| ||  ||| |||| |||||||||||||||||||||||||||||||||||||    
T  20826121 gagaaaccagcaacggcgatacaagcaagtaatagcgtccgcttgaagggggagcatgatgaatagatggactcacacttgag 20826203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 39793010 - 39792961
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39793010 tgtgagttatatgtcccacatcagatagaaaagtaaatgttgaacacctt 39792961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 41707393 - 41707340
Alignment:
Q  28 caagtaagagattccccttggagggggagcatgatgaatagatggactcacact 81  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||    
T  41707393 caagtaagagcttccccttgaagggggagcatgatgaattgatggactcacact 41707340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 54108819 - 54108898
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    |||||| || |||||  |||||||||||||||||| |||| |||| ||||||||||||||||||  || |||||||||||    
T  54108819 gagaaaccagcaacggcgatacaagcaagtaagagcttccgcttgaagggggagcatgatgaattaatagactcacactt 54108898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 18932983 - 18932930
Alignment:
Q  32 taagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||||||||||    
T  18932983 taagagtttccgcttgaagggggagcatgatgaatagatagactcacacttgag 18932930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 22028240 - 22028163
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacac 80  Q
    |||||| || |||||| ||| |||||||||||||| || | |||| |||||||||| |||||| ||||||||||||||    
T  22028240 gagaaaccagcaacgacgattcaagcaagtaagagctttcgcttgaagggggagcacgatgaaaagatggactcacac 22028163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 49076705 - 49076621
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaata--gatggactcacacttgag 85  Q
    |||||| || ||||||  ||||||||||||||||| |||| |||| ||||||| ||||||||| |  ||||||||||||||||||    
T  49076705 gagaaaccagcaacgacaatacaagcaagtaagagtttccgcttgaagggggaacatgatgaaaagtgatggactcacacttgag 49076621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 54741322 - 54741279
Alignment:
Q  97 ttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  54741322 ttatatgtctcacatcggatagaaaagtaaaggttgaacacctt 54741279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2740971 - 2741056
Alignment:
Q  1 cagagaaagcaacaacgaagatacaagcaa-gtaagagattccccttggagggg-gagcatgatgaatagatggactcacacttga 84  Q
    |||||||| || |||||  ||||| ||||| ||||||| |||| |||| ||||| ||||||||||||| |||||||||||||||||    
T  2740971 cagagaaaccagcaacggcgatacgagcaaagtaagagcttccgcttgaaggggagagcatgatgaattgatggactcacacttga 2741056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 3244601 - 3244556
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaaca 136  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||    
T  3244601 tgtgagttatatgtctcacatcggatagaaaagtaaaggttgaaca 3244556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 45489570 - 45489505
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaata-gatggactcacacttgag 85  Q
    |||||||||||||||||| |||| ||| || | ||||||||||||| | ||||||||||||||||||    
T  45489570 gatacaagcaagtaagagcttccgctt-gaagaggagcatgatgaaaacgatggactcacacttgag 45489505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 2740706 - 2740755
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| ||||||| |||||| ||||||||||||    
T  2740706 tgtgagttatatgtcccacatcggatagaacagtaaaggttgaacacctt 2740755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 2741077 - 2741126
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||||||||||| |||||| |||||| |||||    
T  2741077 tgtgagttatatgtcccacatcagatagaatagtaaaggttgaatacctt 2741126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3244705 - 3244628
Alignment:
Q  1 cagagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcac 78  Q
    ||||||||| |  ||||| |||||||||||| ||||| ||    ||| ||||||| ||||||||||||||||||||||    
T  3244705 cagagaaagtagaaacgacgatacaagcaagcaagagcttgtgtttgaagggggaacatgatgaatagatggactcac 3244628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 3271802 - 3271839
Alignment:
Q  103 gtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  3271802 gtctcacatcagatagaaaagtaaaagttaaacacctt 3271839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 16888966 - 16888917
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||||||| |||||| |||||    
T  16888966 tgtgagttatatgtcccacatcggatagaaaagtaaaggttgaatacctt 16888917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 16889686 - 16889637
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||| |||||    
T  16889686 tgtgagttatatgtctcaaatcggatagaaaagtaaaggttgaatacctt 16889637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 34646799 - 34646750
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||| || |||||||||||||||||||    
T  34646799 tgtgagttatatgtcccacatcggataaaacagtaaatgttgaacacctt 34646750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 36629243 - 36629292
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| |||||| |||||||||||||| ||| ||||||||    
T  36629243 tgtgagttatatgtcccacatcggatagaaaagtaaaagttaaacacctt 36629292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 36629172 - 36629223
Alignment:
Q  34 agagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||| |||| |||| ||| |||||||||||||| ||||| ||||||||||||    
T  36629172 agagcttccgcttgaaggtggagcatgatgaattgatgggctcacacttgag 36629223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 44620608 - 44620643
Alignment:
Q  50 gggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| ||||||| ||||||||||||||||||    
T  44620608 gggggagcacgatgaattgatggactcacacttgag 44620643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 44621374 - 44621409
Alignment:
Q  50 gggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| ||||||| ||||||||||||||||||    
T  44621374 gggggagcacgatgaattgatggactcacacttgag 44621409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 5e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 10074239 - 10074163
Alignment:
Q  9 gcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||  |||||||||||||||||| |||| |||| |||||||||||||||||| ||| ||||| ||||||||    
T  10074239 gcaacaacggcgatacaagcaagtaagagcttccgcttgaagggggagcatgatgaattgatagactcgcacttgag 10074163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 2975465 - 2975536
Alignment:
Q  12 acaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttg 83  Q
    ||||||| ||||| |||||||||||| |||| |||  ||||||| ||||||||||||||| |||||||||||    
T  2975465 acaacgacgatacgagcaagtaagagcttccgcttaaagggggaacatgatgaatagatgcactcacacttg 2975536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 2579367 - 2579280
Alignment:
Q  1 cagagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagca---tgatgaatagatggactcacacttgag 85  Q
    |||||||| || |||||  ||||||| |||||||||| |||| |||| | ||||||||   |||||||||||||||||||||||||||    
T  2579367 cagagaaaccagcaacggcgatacaaacaagtaagagcttccgcttgaaaggggagcaacatgatgaatagatggactcacacttgag 2579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 2579747 - 2579664
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaa-gtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| |||||||  |||||||| ||| ||||||| || | |||| ||||||| ||||||||||||| |||||||||||||||    
T  2579747 gagaaaccaacaacagagatacaaacaaagtaagagctttcgcttgaagggggaccatgatgaatagacggactcacacttgag 2579664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 10073851 - 10073789
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    |||||||| ||||||||  |||| |||| ||||||| |||||||||| |||||||||||||||    
T  10073851 gatacaagaaagtaagaccttccgcttgaagggggaacatgatgaattgatggactcacactt 10073789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 16107986 - 16108046
Alignment:
Q  24 caagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||| ||||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||||    
T  16107986 caagaaagtaagagcttccgcttgaagggg-agcatgatgaattgatggactcacacttgag 16108046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 2975567 - 2975607
Alignment:
Q  100 tatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  2975567 tatgtcccacatcaaatagaaaagtaaatgttgaacacctt 2975607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 29518850 - 29518905
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  29518850 aagtaagagcttccgcttg-agggggagcacgatgaattgatggactcacacttgag 29518905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 2378059 - 2378106
Alignment:
Q  32 taagagattccccttggagggggagcatgatgaatagatggactcaca 79  Q
    |||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  2378059 taagagcttccgcttgaagggggagcatgatgaataaatggactcaca 2378106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 85
Target Start/End: Complemental strand, 2578647 - 2578617
Alignment:
Q  55 agcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||||||||||||||||    
T  2578647 agcatgatgaatagatggactcacacttgag 2578617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 3409265 - 3409314
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  3409265 tgtgagttatatgtcccacatcagataaaatagtaaaggttgaacacctt 3409314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 16108069 - 16108118
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||  ||||||||||| || |||||||||||||||||||    
T  16108069 tgtgagttatatgttccacatcagataaaagagtaaatgttgaacacctt 16108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 17135221 - 17135172
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||||| ||||||||||| || |||||    
T  17135221 tgtgagttatatgtctcacatcggatagagaagtaaatgtttaatacctt 17135172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 35210210 - 35210259
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||| || |||||| ||||||||||||    
T  35210210 tgtgagttatatgtctcacatcggataaaatagtaaaggttgaacacctt 35210259  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 10074138 - 10074094
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||| || |||||| |||||||||||||| ||||||||||||    
T  10074138 gttatatatcccacatcggatagaaaagtaaacgttgaacacctt 10074094  T

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Target: chr6; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 85
Target Start/End: Complemental strand, 12092238 - 12092207
Alignment:
Q  54 gagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||||||| ||||||||||||||||||    
T  12092238 gagcatgatgaattgatggactcacacttgag 12092207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 33605667 - 33605706
Alignment:
Q  98 tatatgtctcacatcagatagaaaagtaaatgttgaacac 137  Q
    |||||||||||||||||||||||||||  | |||||||||    
T  33605667 tatatgtctcacatcagatagaaaagtggaggttgaacac 33605706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 8e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 48243334 - 48243252
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||| || |||||  |||||||||||||||||  |||| |||| |||||||||||||||||| |||||| |||||||||||    
T  48243334 gagaaaccagcaacggcgatacaagcaagtaagaacttccacttgaagggggagcatgatgaattgatggattcacacttgag 48243252  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 1085491 - 1085425
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatgg--actcacacttga 84  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||  ||||||||||||    
T  1085491 gatacaagcaagtaagagcttccccttgaaggggtagcatgatgaaaagatggacactcacacttga 1085425  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 34218187 - 34218137
Alignment:
Q  90 atgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  34218187 atgtgagttatatgtctcacatcggataaaaaagtaaatgttgaacacctt 34218137  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 40094630 - 40094569
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacactt 82  Q
    |||||||||||||||||| |||| |||| |||| |||| ||||||||||||||||||||||||    
T  40094630 gatacaagcaagtaagagcttccgcttg-agggagagcgtgatgaatagatggactcacactt 40094569  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 14681438 - 14681495
Alignment:
Q  29 aagtaagagattccccttggagggg-gagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  14681438 aagtaagagcttccgcttgaaggggggagcatgatgaatagatggactcacacttgag 14681495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 37345820 - 37345901
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttga 84  Q
    ||||||||| |||||  ||||||||||||||| || |||| ||||  ||||||||| ||||||| |||| ||||||||||||    
T  37345820 gagaaagcagcaacggcgatacaagcaagtaaaagcttccacttgacgggggagcacgatgaattgatgaactcacacttga 37345901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 118448 - 118405
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacct 139  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  118448 gttatatgtcccacatcagatagaaaagtaaaggttgaacacct 118405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 8128359 - 8128288
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggac 74  Q
    |||||| || |||||| ||||||| |||||||||| |||| |||| | ||| ||||||||||||||||||||    
T  8128359 gagaaaccagcaacgacgatacaaacaagtaagagcttccgcttgaaagggaagcatgatgaatagatggac 8128288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 47129377 - 47129439
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaa 65  Q
    |||||| || ||||||  ||||||||||||||||| |||| |||| |||||||||||||||||    
T  47129377 gagaaaccagcaacgacaatacaagcaagtaagagcttccgcttgaagggggagcatgatgaa 47129439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 28301695 - 28301646
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| |||||||||||||| | ||||||||||    
T  28301695 tgtgagttatatgtctcacatcggatagaaaagtaaaagctgaacacctt 28301646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 6054571 - 6054615
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    ||||||||||||||||| |||| || |||||||||||||||||||    
T  6054571 gttatatgtctcacatcggataaaatagtaaatgttgaacacctt 6054615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 7553953 - 7554008
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  7553953 aagtaagagcttccgcttg-agggggagcacgatgaattgatggactcacacttgag 7554008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 28300405 - 28300373
Alignment:
Q  53 ggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||||||||||||||||||    
T  28300405 ggagcatgatgaatagatggactcacacttgag 28300373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30244619 - 30244684
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatg-aatagatggactcacacttgag 85  Q
    |||||||||||||||||| |||| |||  | ||||||||||||| || |||||||||||||||||||    
T  30244619 gatacaagcaagtaagagcttccgctt-caaggggagcatgatgaaaaagatggactcacacttgag 30244684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30245412 - 30245477
Alignment:
Q  20 gatacaagcaagtaagagattccccttggagggggagcatgatg-aatagatggactcacacttgag 85  Q
    |||||||||||||||||| |||| ||| |||||||||||||||| || ||| |||| ||||||||||    
T  30245412 gatacaagcaagtaagagcttccgctt-gagggggagcatgatgaaaaagacggacacacacttgag 30245477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 45434554 - 45434619
Alignment:
Q  20 gatacaagcaagtaagaga--ttccccttggagggggagcatgatgaatagatggactcacacttg 83  Q
    ||||||||||||||| | |  |||| |||| |||||||||||||||||| || |||||||||||||    
T  45434554 gatacaagcaagtaaaaaagcttccgcttgaagggggagcatgatgaattgaaggactcacacttg 45434619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 45697816 - 45697896
Alignment:
Q  3 gagaaagcaacaacgaagatacaagcaagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||||| | |||| | ||||||||| |||| |||| ||||| ||||||||||||||||  |||||||||||||    
T  45697816 gagaaagcagcaacgacggtaca-gtaagtaagagcttccgcttgaagggg-agcatgatgaatagataaactcacacttgag 45697896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 14681521 - 14681566
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacaccttg 141  Q
    |||||||||| ||||||||||| || |||||| |||||||||||||    
T  14681521 gttatatgtcccacatcagataaaatagtaaaggttgaacaccttg 14681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 16569202 - 16569251
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| ||||||| |||||| |||||| |||||    
T  16569202 tgtgagttatatgtctcacatcggatagaacagtaaaggttgaatacctt 16569251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 16596460 - 16596411
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| ||||||||||||||||| ||||||| |||||| |||||| |||||    
T  16596460 tgtgagttatatgtctcacatcggatagaacagtaaaggttgaatacctt 16596411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 30245500 - 30245549
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||| |||||||||| ||||||||||| || |||||| ||||||||||||    
T  30245500 tgtgagttatatgtcccacatcagataaaagagtaaaggttgaacacctt 30245549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 30245024 - 30245060
Alignment:
Q  49 agggggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  30245024 agggggagcatgatgattagatggactcgcacttgag 30245060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 45434647 - 45434691
Alignment:
Q  96 gttatatgtctcacatcagatagaaaagtaaatgttgaacacctt 140  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||||    
T  45434647 gttatatgtcccacatcggataaaaaagtaaaggttgaacacctt 45434691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 5705 - 5760
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  5705 aagtaagagcttccgcttg-agggggagcaagatgaattgatggactcacacttgag 5760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 17663 - 17631
Alignment:
Q  53 ggagcatgatgaatagatggactcacacttgag 85  Q
    |||||||||||||||||||||||||||||||||    
T  17663 ggagcatgatgaatagatggactcacacttgag 17631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 17608 - 17558
Alignment:
Q  91 tgtgggttatatgtctcacatcagatagaaaagtaaatgttgaacaccttg 141  Q
    |||| |||||||||| ||||||||||| || |||||| |||||||||||||    
T  17608 tgtgagttatatgtcacacatcagataaaatagtaaaggttgaacaccttg 17558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 5284 - 5340
Alignment:
Q  29 aagtaagagattccccttggagggggagcatgatgaatagatggactcacacttgag 85  Q
    ||||||||| |||| |||| |||||||||| ||||||  ||||||||||||||||||    
T  5284 aagtaagagcttccgcttgaagggggagcacgatgaactgatggactcacacttgag 5340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 367 - 320
Alignment:
Q  32 taagagattccccttggagggggagcatgatgaatagatggactcaca 79  Q
    |||||| |||| |||| ||||||||||||||||||| |||||||||||    
T  367 taagagcttccgcttgaagggggagcatgatgaataaatggactcaca 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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