View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5862-9 (Length: 132)
Name: Solexa-NF5862-9
Description: NF5862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5862-9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 16130509 - 16130632
Alignment:
| Q |
9 |
ggtcatggctgggccaatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatgatcgatatgattactaacttacctgagggcgtt |
108 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
16130509 |
ggtcatggctggtccaatctcatcaaccgatgtgcataagatccaacgacataatatggatgacatgatcgatatgattagtgacttacctgaggccgtt |
16130608 |
T |
|
| Q |
109 |
cttcttcgtattctttctttactc |
132 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
16130609 |
cttcttcatattctttctttactc |
16130632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 31274935 - 31274827
Alignment:
| Q |
23 |
caatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatgatcgatatgattactaacttacctgagggcgttcttcttcgtattct |
122 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| | | | || ||||||| |||||| |||| | | ||||||||||| |||||||||| |||||| |
|
|
| T |
31274935 |
caatgtcatcaacagatgtgcataagatccaacgtcgaattttgggcgacatgaacgatataattagtgatttacctgagggtgttcttcttcatattct |
31274836 |
T |
|
| Q |
123 |
ttctttact |
131 |
Q |
| |
|
||||||||| |
|
|
| T |
31274835 |
ttctttact |
31274827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 54220515 - 54220442
Alignment:
| Q |
56 |
gacataatgcggatgacatgatcgatatgattactaacttacctgagggcgttcttcttcgtattctttcttta |
129 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
54220515 |
gacataatgcgggtaacatgaatgatatgattagtgacttacctgaggacgttcttcttgatattctttcttta |
54220442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 12412982 - 12413045
Alignment:
| Q |
13 |
atggctgggccaatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatga |
76 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
12412982 |
atggctggtccaatctcatcaacatatgtgcataagatccaacgacatactatggatgacatga |
12413045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University