View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5863-1 (Length: 360)
Name: Solexa-NF5863-1
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-1 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 5638879 - 5639226
Alignment:
| Q |
7 |
aatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagtacgtatttag |
105 |
Q |
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| T |
5638879 |
aatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagtacgtatttag |
5638978 |
T |
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| Q |
106 |
ttaattttacttaaatttgagttcagagggagtgttcatcactgaacttctttcattttttcccccacgtttccttcattaatacctgaatttgcaggtc |
205 |
Q |
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| T |
5638979 |
ttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaatttgcaggtc |
5639078 |
T |
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| Q |
206 |
tgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttc |
305 |
Q |
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| T |
5639079 |
tgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccatttccctgctctaatatctgtatgttttc |
5639178 |
T |
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| Q |
306 |
aaccttggcagcgattgagtagctctggctatgtcttctctgcttctt |
353 |
Q |
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| T |
5639179 |
aaccttggcagcgattgagtagctctggctatgtcttttctgcttctt |
5639226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 22965261 - 22965436
Alignment:
| Q |
178 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccat |
277 |
Q |
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| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataacttacatcttggttgataatgccttctcatccat |
22965360 |
T |
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| Q |
278 |
ttccctgctctaatatctgtatgttttcaaccttggcagcgattgagtagctctggctatgtcttctctgcttctt |
353 |
Q |
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| T |
22965361 |
ttcccttctctaatatctttatgttttcaaatttggcagcgattgagtagctctggctatgtcttttctgcttctt |
22965436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 320
Target Start/End: Complemental strand, 38954654 - 38954514
Alignment:
| Q |
180 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatgccttctcatccattt |
279 |
Q |
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| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataacttacatcttggttgataatgccttctcatccattt |
38954555 |
T |
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| Q |
280 |
ccctgctctaatatctgtatgttttcaaccttggcagcgat |
320 |
Q |
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| T |
38954554 |
cccttctctaatatctttatgttttcaaatttggcagcgat |
38954514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 21423032 - 21422978
Alignment:
| Q |
299 |
tgttttcaaccttggcagcgattgagtagctctggctatgtcttctctgcttctt |
353 |
Q |
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|||||||||| || ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
21423032 |
tgttttcaacttttacagcgattgagtagctctggctacgtcttttctgcttctt |
21422978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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