View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5863-14 (Length: 137)
Name: Solexa-NF5863-14
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-14 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 38954367 - 38954503
Alignment:
| Q |
1 |
gagatcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagc |
100 |
Q |
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| T |
38954367 |
gagatcaaaccctccctttccataacacatcaatgttgctcttcaactttgctaatagattgggattttcctcaaggacgtcaatagctgtaatggcagc |
38954466 |
T |
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| Q |
101 |
acttgcaagatatggaggtaaagaagcagaaaagaca |
137 |
Q |
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| T |
38954467 |
acttgcaagatatggaggcaaagaagcagaaaagaca |
38954503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 8e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22965556 - 22965420
Alignment:
| Q |
1 |
gagatcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagc |
100 |
Q |
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| T |
22965556 |
gagatcaaaccctccctctccataacacatcaatgttgctcttcaactttgctaatagattgggattttcctcaaggacgtcaatagttgtaatggcagc |
22965457 |
T |
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| Q |
101 |
acttgcaagatatggaggtaaagaagcagaaaagaca |
137 |
Q |
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| T |
22965456 |
acttgcaagatatggaggcaaagaagcagaaaagaca |
22965420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 5639311 - 5639210
Alignment:
| Q |
36 |
ttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaaga |
135 |
Q |
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| T |
5639311 |
ttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaaga |
5639212 |
T |
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| Q |
136 |
ca |
137 |
Q |
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|| |
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| T |
5639211 |
ca |
5639210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5651177 - 5651139
Alignment:
| Q |
1 |
gagatcaaaccctacctttccataaaacatcaatgttgt |
39 |
Q |
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| T |
5651177 |
gagatcaaaccctacctttccataaaacatcaatattgt |
5651139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 30634075 - 30634207
Alignment:
| Q |
4 |
atcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcact |
103 |
Q |
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|||||| ||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||| || |
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| T |
30634075 |
atcaaagcctacctttccataacacagcaatgttgttcttcaactttgttaatatattgggattttcgtcaaggacatcaatagctgtaattgcagcgct |
30634174 |
T |
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| Q |
104 |
tgcaagatatggaggtaaagaagcagaaaagac |
136 |
Q |
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| T |
30634175 |
tgcaagatatggaggcaaagaagcagaaaagac |
30634207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 21422861 - 21422993
Alignment:
| Q |
4 |
atcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcact |
103 |
Q |
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|||||| ||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||| || |
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| T |
21422861 |
atcaaagcctacctttccataacacagcaatgttgttcttcaactttgttaatacattgggattttcgtcaaggacatcaatagctgtaattgcagcgct |
21422960 |
T |
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| Q |
104 |
tgcaagatatggaggtaaagaagcagaaaagac |
136 |
Q |
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| T |
21422961 |
tgcaagatatggaggcaaagaagcagaaaagac |
21422993 |
T |
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