View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5863-15 (Length: 136)
Name: Solexa-NF5863-15
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-15 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5651586 - 5651451
Alignment:
| Q |
1 |
cacagatacagaatcttctttcaaaacctgtgcaatacagaacattaagtaacaaagaaactgaaaataagaaatgtatattgttcagtcaaaaaataca |
100 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5651586 |
cacaaatacagaatcttctttcaaaacctgtggaatacagaacattaagtaccaacaaaactgaaaataagaaatgtatattgttcagtcaaaaaataaa |
5651487 |
T |
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| Q |
101 |
taaacatcttcagactgcatatcttacacgctcggc |
136 |
Q |
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| T |
5651486 |
taaacatcttcagactgcatttcttacacgctcggc |
5651451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 22965914 - 22965779
Alignment:
| Q |
1 |
cacagatacagaatcttctttcaaaacctgtgcaatacagaacattaagtaacaaagaaactgaaaataagaaatgtatattgttcagtcaaaaaataca |
100 |
Q |
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|||| |||||||||||||||||||||||| || ||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | |
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| T |
22965914 |
cacaaatacagaatcttctttcaaaacctttggaatgcagaacattaagtaccaacaaaactgaaaataagaaatgtatattgctcagtcaaaaaataaa |
22965815 |
T |
|
| Q |
101 |
taaacatcttcagactgcatatcttacacgctcggc |
136 |
Q |
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| T |
22965814 |
caaacatcttcagactgcatttcttacatgctcggc |
22965779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 38954009 - 38954144
Alignment:
| Q |
1 |
cacagatacagaatcttctttcaaaacctgtgcaatacagaacattaagtaacaaagaaactgaaaataagaaatgtatattgttcagtcaaaaaataca |
100 |
Q |
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|||| ||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | |
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| T |
38954009 |
cacaaatacagaatcttctttcaaaacctgtggaatgcagaacattaagtaccaacaaaactgaaaataagaaatgtatattgctcagtcaaaaaataaa |
38954108 |
T |
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| Q |
101 |
taaacatcttcagactgcatatcttacacgctcggc |
136 |
Q |
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| T |
38954109 |
caaacatcttcagactgcatttcttacatgctcggc |
38954144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30633746 - 30633788
Alignment:
| Q |
1 |
cacagatacagaatcttctttcaaaacctgtgcaatacagaaca |
44 |
Q |
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| T |
30633746 |
cacaaatacagaatcttctttcaaaacctgtg-aatacagaaca |
30633788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21422474 - 21422516
Alignment:
| Q |
1 |
cacagatacagaatcttctttcaaaacctgtgcaatacagaaca |
44 |
Q |
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| T |
21422474 |
cacaaatacagaatcttctttcaaaacctgtg-aatacagaaca |
21422516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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