View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5863-16 (Length: 135)
Name: Solexa-NF5863-16
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-16 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 53457655 - 53457771
Alignment:
| Q |
19 |
ttaagcagttatcatatagcatataggtgcttatagataaactattttcatggttaaagttaaaataaagtcagactactgtcatacagtttgtggacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53457655 |
ttaagcagttatcatatagcatataggtgcttatagataaactattttcatggctaaagttaaaataaagtcagactattgtcatacagtttgtggacaa |
53457754 |
T |
|
| Q |
119 |
gccttaagttgtttcca |
135 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
53457755 |
gccttaagttgtttcca |
53457771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University