View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5863-17 (Length: 132)
Name: Solexa-NF5863-17
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 77; Significance: 4e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 35010147 - 35010271
Alignment:
| Q |
1 |
cagagaagttaggagtaatcatgataaactgagaaacctcttattaaacaaagatttggactcgtcctatgttgatggtttctgtgagaagcttcgagaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| || |||||| |||||||||| || |||| |||||||||||||||||||||||||| | || |
|
|
| T |
35010147 |
cagagaagttaggaataatcatgataaactcaggaaccttttgttaaaccaagatttggagtcatcctgtgttgatggtttctgtgagaagcttcaaaaa |
35010246 |
T |
|
| Q |
101 |
ttagtcaggtgatttcctaattagt |
125 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
35010247 |
ttagtcaggtgattttctaattagt |
35010271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 35035786 - 35035662
Alignment:
| Q |
1 |
cagagaagttaggagtaatcatgataaactgagaaacctcttattaaacaaagatttggactcgtcctatgttgatggtttctgtgagaagcttcgagaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| || |||||| |||||||||| || || | |||||||||||||||||||||||||| |||| |
|
|
| T |
35035786 |
cagagaagttaggaataatcatgataaactcaggaaccttttgttaaaccaagatttggagtcatcttgtgttgatggtttctgtgagaagcttcaagaa |
35035687 |
T |
|
| Q |
101 |
ttagtcaggtgatttcctaattagt |
125 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
35035686 |
ttagtcaggtgattttctaattagt |
35035662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 35017239 - 35017299
Alignment:
| Q |
65 |
tcctatgttgatggtttctgtgagaagcttcgagaattagtcaggtgatttcctaattagt |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35017239 |
tcctatgttgatggtttctgcgagaagcttggagaattagtcaggtgatttcctaattagt |
35017299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 36289697 - 36289821
Alignment:
| Q |
1 |
cagagaagttaggagtaatcatgataaactgagaaacctcttattaaacaaagatttggactcgtcctatgttgatggtttctgtgagaagcttcgagaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| || |||||||||| | | |||||||| || || | ||||| || ||||||||||||||||| |||| |
|
|
| T |
36289697 |
cagagaagttaggaataatcatgataaattgaggaagctcttattaagccatgatttggagtcatcttgtgttggtgttttctgtgagaagcttcaagaa |
36289796 |
T |
|
| Q |
101 |
ttagtcaggtgatttcctaattagt |
125 |
Q |
| |
|
||| |||| ||||| ||||||||| |
|
|
| T |
36289797 |
ttaaccaggcgattttctaattagt |
36289821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University