View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5863-19 (Length: 131)

Name: Solexa-NF5863-19
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5863-19
Solexa-NF5863-19
[»] chr6 (13 HSPs)
chr6 (1-131)||(9074065-9074195)
chr6 (15-92)||(9075213-9075290)
chr6 (27-98)||(30003249-30003320)
chr6 (25-118)||(1912459-1912552)
chr6 (41-118)||(2732951-2733028)
chr6 (44-119)||(29243064-29243139)
chr6 (4-118)||(7939890-7940004)
chr6 (25-118)||(2457231-2457324)
chr6 (49-118)||(14933138-14933207)
chr6 (73-118)||(31694723-31694768)
chr6 (45-80)||(3784911-3784946)
chr6 (52-83)||(7939836-7939867)
chr6 (10-105)||(33532429-33532524)
[»] chr1 (7 HSPs)
chr1 (25-118)||(7347708-7347801)
chr1 (45-117)||(6025943-6026015)
chr1 (63-118)||(3240494-3240549)
chr1 (20-85)||(8856801-8856866)
chr1 (45-107)||(43391507-43391569)
chr1 (49-105)||(24674126-24674182)
chr1 (73-117)||(32721437-32721481)
[»] chr8 (10 HSPs)
chr8 (25-78)||(42822640-42822693)
chr8 (49-99)||(2302682-2302732)
chr8 (45-103)||(16690945-16691003)
chr8 (26-100)||(45371052-45371126)
chr8 (43-118)||(30560103-30560179)
chr8 (25-106)||(7108199-7108280)
chr8 (55-112)||(13850991-13851048)
chr8 (82-117)||(11412606-11412641)
chr8 (25-85)||(27330044-27330106)
chr8 (15-70)||(41686219-41686274)
[»] chr5 (8 HSPs)
chr5 (25-106)||(4787939-4788020)
chr5 (25-89)||(5987329-5987393)
chr5 (49-118)||(10389944-10390013)
chr5 (25-78)||(34556518-34556571)
chr5 (73-118)||(38346877-38346922)
chr5 (15-80)||(42440148-42440213)
chr5 (25-89)||(11709457-11709521)
chr5 (14-98)||(41846725-41846809)
[»] chr7 (16 HSPs)
chr7 (15-91)||(48517388-48517464)
chr7 (52-118)||(44124546-44124612)
chr7 (25-118)||(30900065-30900158)
chr7 (25-67)||(21173944-21173986)
chr7 (26-100)||(32888969-32889043)
chr7 (27-100)||(45056129-45056205)
chr7 (65-118)||(7245942-7245995)
chr7 (73-118)||(8095907-8095952)
chr7 (25-106)||(23218573-23218654)
chr7 (65-118)||(36238767-36238820)
chr7 (47-131)||(30477939-30478023)
chr7 (49-100)||(10455095-10455146)
chr7 (25-92)||(24673377-24673444)
chr7 (54-116)||(26848530-26848590)
chr7 (27-106)||(33581755-33581834)
chr7 (63-106)||(38622870-38622913)
[»] chr3 (13 HSPs)
chr3 (44-118)||(24830152-24830226)
chr3 (25-85)||(7877822-7877882)
chr3 (57-107)||(8788959-8789009)
chr3 (50-108)||(2101636-2101694)
chr3 (49-118)||(43307604-43307673)
chr3 (25-98)||(54838617-54838690)
chr3 (75-123)||(27016927-27016975)
chr3 (27-78)||(3715360-3715411)
chr3 (51-118)||(18403324-18403391)
chr3 (63-118)||(20690071-20690126)
chr3 (73-108)||(24092349-24092384)
chr3 (44-103)||(43307667-43307726)
chr3 (49-100)||(54375437-54375488)
[»] chr4 (8 HSPs)
chr4 (46-106)||(34581606-34581666)
chr4 (74-118)||(2843583-2843627)
chr4 (25-115)||(3301579-3301669)
chr4 (66-114)||(16495051-16495099)
chr4 (63-103)||(20989522-20989562)
chr4 (26-117)||(681986-682077)
chr4 (25-92)||(4683772-4683839)
chr4 (65-104)||(18968304-18968343)
[»] chr2 (6 HSPs)
chr2 (49-118)||(42616718-42616787)
chr2 (15-115)||(10605449-10605549)
chr2 (54-104)||(3110522-3110572)
chr2 (54-118)||(11530044-11530108)
chr2 (54-118)||(31790468-31790532)
chr2 (63-118)||(26174940-26174995)
[»] scaffold0913 (1 HSPs)
scaffold0913 (66-106)||(1272-1312)
[»] scaffold0898 (1 HSPs)
scaffold0898 (66-106)||(4289-4329)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 1e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 9074065 - 9074195
Alignment:
Q  1 atcacagatcgtgaaaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074065 atcacagatcgcgaaaaacagtgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 9074164  T
Q  101 tgtatcgcaaaacaatagaaactaattcaaa 131  Q
    |||||||||||||||||||||||||||||||    
T  9074165 tgtatcgcaaaacaatagaaactaattcaaa 9074195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 9075290 - 9075213
Alignment:
Q  15 aaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgta 92  Q
    ||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9075290 aaaacagtggtttgttcacattccgttatacaacagtgctatagcgccgctataacctctatttgacaacattttgta 9075213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 30003249 - 30003320
Alignment:
Q  27 tgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaat 98  Q
    |||||||||||   ||||||||| |||||||| |||||| |||||||||||||| ||||||||||| |||||    
T  30003249 tgttcaaattctgctatacaacaatgctatagagccgctttagcctctatttgacaacattttgtaataaat 30003320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 1912459 - 1912552
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||||||||||  ||| |||| ||||||||||| | |||||| | |||||||| || | |||||| |||||||| ||||||| ||||||||    
T  1912459 tttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatatcgcagaacaatag 1912552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 2733028 - 2732951
Alignment:
Q  41 tatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||| |||  ||||||||| |||||||  |||||||| ||||||||||| |||||||  ||||||||||||||||    
T  2733028 tatacaatagtattatagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatag 2732951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 29243064 - 29243139
Alignment:
Q  44 acaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaataga 119  Q
    |||||| |||||||||||| |||||||| | ||||||  | ||||| || ||||||||||||| || |||||||||    
T  29243064 acaacaatgctatagcgccactatagccgcaatttgactagattttatattaaatagtgtatcccagaacaataga 29243139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 7940004 - 7939890
Alignment:
Q  4 acagatcgtgaaaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgt 103  Q
    |||||| |||||||| || |  ||| |||||||||  ||| | |||||||||||| ||| |||||||| |||||||| | || |||||| | ||||| ||    
T  7940004 acagattgtgaaaaatagggggttgatcaaattccgctatgctacagtgctatagagccactatagccgctatttgacatcactttgtactgaatagagt 7939905  T
Q  104 atcgcaaaacaatag 118  Q
    ||| || ||||||||    
T  7939904 atctcagaacaatag 7939890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 2457324 - 2457231
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||||||||  | |||| | |||||||| || | ||||| | || ||||| ||||||||||| |||||||  |||| |||||||||||    
T  2457324 tttgttcaaattccaccacacaataatgctatagagctgttatagtcgctgtttgacaacattttgtactaaatagcatatcacaaaacaatag 2457231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 14933207 - 14933138
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||| ||||||||| ||||| || |||| ||| |||| |||||| |||| ||||||||||| ||||||||    
T  14933207 agtgttatagcgccactatatccgctatctgacaacaatttgtactaaagagtgtatcgcagaacaatag 14933138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 31694723 - 31694768
Alignment:
Q  73 ctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||    
T  31694723 ctatttgaaaacattttgtactaaatagtgtatcacagaacaatag 31694768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 80
Target Start/End: Original strand, 3784911 - 3784946
Alignment:
Q  45 caacagtgctatagcgccgctatagcctctatttga 80  Q
    ||||||||||| |||||||||||||||||| |||||    
T  3784911 caacagtgctagagcgccgctatagcctctgtttga 3784946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 7939867 - 7939836
Alignment:
Q  52 gctatagcgccgctatagcctctatttgataa 83  Q
    ||||||| ||||||||||||||||||||||||    
T  7939867 gctatagtgccgctatagcctctatttgataa 7939836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 33532429 - 33532524
Alignment:
Q  10 cgtgaaaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtat 105  Q
    |||| |||| |||| |||||||||||||   ||  |||||||||||||||||  |||||||  || ||||| |||||| |||| ||||||| ||||    
T  33532429 cgtggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtat 33532524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 5e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 7347801 - 7347708
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||||| |||||  ||||||| |||||||||| |||||||| |||||| | || |||||||| |||||||||||| ||||||||||||    
T  7347801 tttgttcaaattacattacgcaacagtactatagcgcctctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatag 7347708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 6025943 - 6026015
Alignment:
Q  45 caacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaata 117  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||  ||||||  |||||||    
T  6025943 caacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaata 6026015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 3240549 - 3240494
Alignment:
Q  63 gctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||||||||||| |||||| | || ||||||| |||||||||||||||||    
T  3240549 gctatagcctctatttgacaacattgtttaataaatagcgtatcgcaaaacaatag 3240494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 8856866 - 8856801
Alignment:
Q  20 agcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataaca 85  Q
    |||| ||||||||||||||| || |  |||||||||||| ||||||||||| ||||||||| ||||    
T  8856866 agcggtttgttcaaattccactacaatacagtgctatagtgccgctatagcttctatttgacaaca 8856801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 43391507 - 43391569
Alignment:
Q  45 caacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcg 107  Q
    |||||||||||||||   ||||||||| | |||||| ||||||||||| ||||||||| ||||    
T  43391507 caacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcg 43391569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 24674182 - 24674126
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtat 105  Q
    ||||||||| |||  ||||||||  |||||||||||||||| || ||||||||||||    
T  24674182 agtgctataacgctactatagccattatttgataacattttatactaaatagtgtat 24674126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 32721481 - 32721437
Alignment:
Q  73 ctatttgataacattttgtagtaaatagtgtatcgcaaaacaata 117  Q
    |||||||| ||||||||||| |||||||||  |||||||||||||    
T  32721481 ctatttgacaacattttgtactaaatagtgcttcgcaaaacaata 32721437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 42822693 - 42822640
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctattt 78  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  42822693 tttgttcaaattccactatgcaacagtgctatagcgccgctatagccactattt 42822640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 2302682 - 2302732
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaata 99  Q
    |||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  2302682 agtgctatagcgtcgctgttgcctctatttgataacattttgtactaaata 2302732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 16690945 - 16691003
Alignment:
Q  45 caacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgt 103  Q
    |||||||||||||| |||| |||| ||||||||||| ||||||||||| |||| |||||    
T  16690945 caacagtgctatagtgccgttataccctctatttgaaaacattttgtactaaacagtgt 16691003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 45371052 - 45371126
Alignment:
Q  26 ttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 100  Q
    ||||| |||||||| || ||||||||||||||| |||| |||||   |||||||| ||||||||||| |||||||    
T  45371052 ttgttaaaattccactacacaacagtgctatagtgccgttatagtagctatttgacaacattttgtactaaatag 45371126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 30560179 - 30560103
Alignment:
Q  43 tacaacagtgctatagcgccgctatagcctctatttgataacattttgt-agtaaatagtgtatcgcaaaacaatag 118  Q
    ||||| |||||||||| ||| |||||||  | |||||| |||||||| | | |||||||||||||||||||||||||    
T  30560179 tacaatagtgctatagtgccactatagctgcaatttgacaacatttttttactaaatagtgtatcgcaaaacaatag 30560103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 7108280 - 7108199
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||||||| | ||| ||||  |||||||| ||| |||||||  ||||| || | ||||||||| |||||||||||||    
T  7108280 tttgttcaaattctactatgcaacgatgctatagtgccactatagcaactattcgacagcattttgtaataaatagtgtatc 7108199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 13850991 - 13851048
Alignment:
Q  55 atagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaa 112  Q
    ||||| || |||| ||| |||||||||||||||||||| |||||||| |||| |||||    
T  13850991 atagcacctctattgccactatttgataacattttgtactaaatagtatatcacaaaa 13851048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 11412606 - 11412641
Alignment:
Q  82 aacattttgtagtaaatagtgtatcgcaaaacaata 117  Q
    ||||||||||| |||||||||||||||| |||||||    
T  11412606 aacattttgtactaaatagtgtatcgcagaacaata 11412641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 27330044 - 27330106
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgcc--gctatagcctctatttgataaca 85  Q
    ||||||||||||||  ||| | ||||||||||||| |   |||||||||||||||||||||||    
T  27330044 tttgttcaaattccgctattccacagtgctatagcacactgctatagcctctatttgataaca 27330106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 41686219 - 41686274
Alignment:
Q  15 aaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagc 70  Q
    |||| |||| |||||||||||| |  ||| ||||||||||||| ||||||||||||    
T  41686219 aaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctatagc 41686274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 4788020 - 4787939
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||||||||  |||| ||||||||||||| |||  | ||||| |||||||| ||||||||||| |||||||||||||    
T  4788020 tttgttcaaattccgatataaaacagtgctatagtgcctgtgtagccactatttgacaacattttgtactaaatagtgtatc 4787939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 5987393 - 5987329
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacatttt 89  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||| ||| |||| ||||||||    
T  5987393 tttgatcaaattccattatgcaatagtgctatagcgccgctatagccactacttgacaacatttt 5987329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 10389944 - 10390013
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||| | | ||||||||  || |||| ||||||||||| |||||||||||||||| ||||||||    
T  10389944 agtgctatagggtcactatagccgatacttgacaacattttgtaataaatagtgtatcgcataacaatag 10390013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 34556571 - 34556518
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctattt 78  Q
    ||||||||||||||||||| ||| |||||||||| ||| |||||||| ||||||    
T  34556571 tttgttcaaattccattatgcaatagtgctatagtgccactatagccgctattt 34556518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 38346922 - 38346877
Alignment:
Q  73 ctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||    
T  38346922 ctatttgacaacattttgtagtaaatagtgtatcacagaacaatag 38346877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 42440213 - 42440148
Alignment:
Q  15 aaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttga 80  Q
    ||||||| | ||||||||||||||  ||| | |||||| |||||| | ||||||||||||||||||    
T  42440213 aaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctatttga 42440148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 11709521 - 11709457
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacatttt 89  Q
    ||||||||||||||  || ||||||||||||||| | | |||||||| |||||| |||| |||||    
T  11709521 tttgttcaaattccgatacacaacagtgctatagtggctctatagccactatttcataatatttt 11709457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 41846725 - 41846809
Alignment:
Q  14 aaaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaat 98  Q
    |||||||||| |||| ||||||||   ||| || |||||||||||||||||||||| | | |||| | || |||||||| |||||    
T  41846725 aaaaacagcggtttgctcaaattctgctatgcagcagtgctatagcgccgctatagtcaccatttcacaatattttgtactaaat 41846809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 48517388 - 48517464
Alignment:
Q  15 aaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgt 91  Q
    |||| |||| |||||||||||| |  ||||||||| |||||||||||||||||| || |||||||| ||||||||||    
T  48517388 aaaatagcggtttgttcaaatttcgctatacaacattgctatagcgccgctataaccactatttgaaaacattttgt 48517464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 44124612 - 44124546
Alignment:
Q  52 gctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||||||||||||| |  |||||||| || ||| |||| |||||||||||||||| ||||||||    
T  44124612 gctatagcgccgctatatcagctatttgacaatattctgtactaaatagtgtatcgcagaacaatag 44124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 30900065 - 30900158
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||| |||||||||  |||  |||||| ||||||| |||| |||||| |||||| | || |||||||| |||||||||||||||  ||||||||    
T  30900065 tttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctgaacaatag 30900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 21173944 - 21173986
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctat 67  Q
    |||||||||||||||| || ||| |||||||||||||||||||    
T  21173944 tttgttcaaattccataatgcaatagtgctatagcgccgctat 21173986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 32889043 - 32888969
Alignment:
Q  26 ttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 100  Q
    |||||||||||||| ||| | |||| | ||||||||||| |||||| |||||||| || | |||||| |||||||    
T  32889043 ttgttcaaattccactatgctacagagttatagcgccgcaatagccactatttgacaatactttgtactaaatag 32888969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 45056129 - 45056205
Alignment:
Q  27 tgttcaaattccattatacaacagtgctatagcgccgctatagcctc---tatttgataacattttgtagtaaatag 100  Q
    ||||||||||||  ||||||||||||||| | |||||||||||| ||   |||||||||| ||||| ||| ||||||    
T  45056129 tgttcaaattccgctatacaacagtgctacaacgccgctatagcttctaatatttgataatattttataggaaatag 45056205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 7245942 - 7245995
Alignment:
Q  65 tatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||| |||||||| |||| |||||| ||||||| ||||||||||| |||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagcgtatcgcaaaagaatag 7245995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 8095952 - 8095907
Alignment:
Q  73 ctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||    
T  8095952 ctattcgacaacattttgtactaaatagtgtatcgcaacacaatag 8095907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 23218573 - 23218654
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    |||||| ||||||| |||| || |||||||||||||||  ||||    |||||||| ||||||||||| ||||||| |||||    
T  23218573 tttgtttaaattccgttatgcagcagtgctatagcgccattatatttgctatttgacaacattttgtattaaatagcgtatc 23218654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 36238767 - 36238820
Alignment:
Q  65 tatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||||||||  || |||||| |||||||||||||| || |||||||||    
T  36238767 tatagcctctatttggcaatattttgcagtaaatagtgtatggcgaaacaatag 36238820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 30478023 - 30477939
Alignment:
Q  47 acagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatagaaactaattcaaa 131  Q
    |||||||||||  |||| ||||||| |||||||| |||| ||||||  ||||| || |||||| |||||||| || | |||||||    
T  30478023 acagtgctatattgccgatatagccactatttgacaacactttgtacaaaataatgcatcgcagaacaatagtaatttattcaaa 30477939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 10455146 - 10455095
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 100  Q
    |||||||||||||| |||||||| | |||||| || |||||||| |||||||    
T  10455146 agtgctatagcgccactatagccgcaatttgacaaaattttgtactaaatag 10455095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 24673377 - 24673444
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgta 92  Q
    |||||||||||||   ||| |||||||| ||| | |||||||||||  |||||||| |||||||||||    
T  24673377 tttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgta 24673444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 26848590 - 26848530
Alignment:
Q  54 tatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaat 116  Q
    ||||| ||| |||||||| ||||||||  |||||||||| |||||||||||| || |||||||    
T  26848590 tatagtgccactatagccgctatttga--acattttgtactaaatagtgtattgcgaaacaat 26848530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 33581834 - 33581755
Alignment:
Q  27 tgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    |||||||||||| ||| | ||||||| |||||| || |||| ||| |||||||| ||||| |||||  |||||| |||||    
T  33581834 tgttcaaattccgttacaaaacagtgttatagcaccactatggccgctatttgacaacatattgtatcaaatagcgtatc 33581755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 38622870 - 38622913
Alignment:
Q  63 gctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||| |||||||| ||||||||||  |||||||||||||    
T  38622870 gctatagccgctatttgacaacattttgtgctaaatagtgtatc 38622913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 24830226 - 24830152
Alignment:
Q  44 acaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||| ||||||||||||||| |||||||| ||||||| |||||||| || |||||||||||| | | ||||||||    
T  24830226 acaagagtgctatagcgccgatatagcctttatttgacaacattttatactaaatagtgtattgtagaacaatag 24830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 7877882 - 7877822
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataaca 85  Q
    ||||||||||||||| || || |||||||||||||| | | ||||||||||||||||||||    
T  7877882 tttgttcaaattccactacactacagtgctatagcgtcccaatagcctctatttgataaca 7877822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 8788959 - 8789009
Alignment:
Q  57 agcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcg 107  Q
    |||||| ||||||||||||||||| ||||||||||| | ||||||||||||    
T  8788959 agcgccactatagcctctatttgacaacattttgtatttaatagtgtatcg 8789009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 2101636 - 2101694
Alignment:
Q  50 gtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgc 108  Q
    ||||||||||| || |||||||  ||||||| |||| |||||| |||||||||||||||    
T  2101636 gtgctatagcgtcgttatagccgttatttgacaacactttgtactaaatagtgtatcgc 2101694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 43307604 - 43307673
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||||||| ||||| || |||| | | ||||||||||| |||| || ||||| |||||||||||    
T  43307604 agtgctatagcgccactataaccactatctaacaacattttgtactaaacagcgtatcacaaaacaatag 43307673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 54838690 - 54838617
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaat 98  Q
    ||||||||||||||  | | |||||||||||||||| |  | ||||| |||||||| ||||||||||| |||||    
T  54838690 tttgttcaaattccgctgtgcaacagtgctatagcggcattttagccactatttgacaacattttgtactaaat 54838617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 27016927 - 27016975
Alignment:
Q  75 atttgataacattttgtagtaaatagtgtatcgcaaaacaatagaaact 123  Q
    |||||| ||||||||||| |||||||| |||| ||||| ||||||||||    
T  27016927 atttgacaacattttgtactaaatagtatatcacaaaataatagaaact 27016975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 3715360 - 3715411
Alignment:
Q  27 tgttcaaattccattatacaacagtgctatagcgccgctatagcctctattt 78  Q
    ||||||||||||| |||||| || || ||||||| |||| ||||||||||||    
T  3715360 tgttcaaattccactatacatcaatgatatagcgtcgctttagcctctattt 3715411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 18403324 - 18403391
Alignment:
Q  51 tgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||||| | ||||||||| |||||| | |||| || | | ||||| |||||||||||||||||||    
T  18403324 tgctatagctcagctatagccactatttaacaacacttagaactaaattgtgtatcgcaaaacaatag 18403391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 20690071 - 20690126
Alignment:
Q  63 gctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||| || ||||||||||||||||||   |||||||||||||||  ||||||||    
T  20690071 gctataaccactatttgataacattttgctctaaatagtgtatcgccgaacaatag 20690126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 24092349 - 24092384
Alignment:
Q  73 ctatttgataacattttgtagtaaatagtgtatcgc 108  Q
    |||||||||||||| ||||||||||| |||||||||    
T  24092349 ctatttgataacatcttgtagtaaatcgtgtatcgc 24092384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 43307667 - 43307726
Alignment:
Q  44 acaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgt 103  Q
    |||| |||||||||||||| ||||| || |||| ||| |||||||| || ||||||||||    
T  43307667 acaatagtgctatagcgccactataaccgctatctgacaacattttctattaaatagtgt 43307726  T

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Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 54375488 - 54375437
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatag 100  Q
    ||||||||| |||| ||||||   |||||||||||||||||||| |||||||    
T  54375488 agtgctatatcgccactatagaggctatttgataacattttgtactaaatag 54375437  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 34581666 - 34581606
Alignment:
Q  46 aacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||||||||||  |||||||| |||||||| ||||||||||| ||||||| |||||    
T  34581666 aacagtgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatc 34581606  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 2843583 - 2843627
Alignment:
Q  74 tatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||||    
T  2843583 tatttgacaacattttgtactaaatagtgtatcgcagaacaatag 2843627  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 3301579 - 3301669
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaa 115  Q
    ||||||||||||||| |   | |||||||||||||| | |||||||  |||||| | || || ||||| ||||||| ||||||||||||||    
T  3301579 tttgttcaaattccactgcgctacagtgctatagcgtcactatagctgctatttaacaaaatattgtactaaatagagtatcgcaaaacaa 3301669  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 16495099 - 16495051
Alignment:
Q  66 atagcctctatttgataacattttgtagtaaatagtgtatcgcaaaaca 114  Q
    |||||| ||||||||||||| |||||| |||||| |||| |||||||||    
T  16495099 atagccgctatttgataacactttgtactaaatattgtaccgcaaaaca 16495051  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 20989562 - 20989522
Alignment:
Q  63 gctatagcctctatttgataacattttgtagtaaatagtgt 103  Q
    ||||||||| |||||||| ||||||||||| ||||||||||    
T  20989562 gctatagccgctatttgacaacattttgtactaaatagtgt 20989522  T

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Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 682077 - 681986
Alignment:
Q  26 ttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaata 117  Q
    |||||||| ||| ||||| ||| ||| ||||||| | |||||| ||||||||||| ||||| ||||| ||| |||   |||||| |||||||    
T  682077 ttgttcaacttctattatgcaatagtactatagcactgctataacctctatttgacaacatgttgtactaactagcacatcgcagaacaata 681986  T

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Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 4683772 - 4683839
Alignment:
Q  25 tttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgta 92  Q
    |||||| ||||||  ||| ||||| | |||||||||||| ||||||| |||||||| || ||||||||    
T  4683772 tttgttaaaattctgttacacaactgcgctatagcgccgatatagcccctatttgacaatattttgta 4683839  T

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Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 18968343 - 18968304
Alignment:
Q  65 tatagcctctatttgataacattttgtagtaaatagtgta 104  Q
    ||||||| |||||||| ||||||||||| |||||||||||    
T  18968343 tatagccgctatttgacaacattttgtactaaatagtgta 18968304  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 42616718 - 42616787
Alignment:
Q  49 agtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    |||||||||| ||| ||||| |  |||||||| |||| |||||| ||||||||| |||||||||||||||    
T  42616718 agtgctatagtgccactataactgctatttgacaacactttgtactaaatagtggatcgcaaaacaatag 42616787  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 10605449 - 10605549
Alignment:
Q  15 aaaacagcgttttgttcaaattccattatacaacagtgctatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaaca 114  Q
    ||||||||| | |||||| ||||   ||| || |||||||||| | ||| ||||||| |||||||| || |||||||| ||||||||||||| || ||||    
T  10605449 aaaacagcggtctgttcagattctgctatgcaccagtgctataacaccgatatagccactatttgacaagattttgtattaaatagtgtatcacagaaca 10605548  T
Q  115 a 115  Q
    |    
T  10605549 a 10605549  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 3110522 - 3110572
Alignment:
Q  54 tatagcgccgctatagcctctatttgataacattttgtagtaaatagtgta 104  Q
    |||||||||||||||||| |||||||| |||  |||||| |||||||||||    
T  3110522 tatagcgccgctatagccactatttgacaacgctttgtactaaatagtgta 3110572  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 11530108 - 11530044
Alignment:
Q  54 tatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||| ||| |||||||| |||||| | || ||| |||| |||||||||||||||| ||||||||    
T  11530108 tatagtgccactatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatag 11530044  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 31790468 - 31790532
Alignment:
Q  54 tatagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||||| ||||| || |||| ||| |||||||| || |||||||||||| ||| ||||||||    
T  31790468 tatagcgccactatatccactatatgacaacattttatactaaatagtgtatggcagaacaatag 31790532  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 26174995 - 26174940
Alignment:
Q  63 gctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaacaatag 118  Q
    ||||||||  |||||||| ||||| || || |||||||||||||||| ||||||||    
T  26174995 gctatagctgctatttgacaacatattatactaaatagtgtatcgcagaacaatag 26174940  T

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Target: scaffold0913 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 1272 - 1312
Alignment:
Q  66 atagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||||||||| |||| |||||| |||||||||||||    
T  1272 atagcctctatttgacaacactttgtactaaatagtgtatc 1312  T

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Target: scaffold0898 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 4329 - 4289
Alignment:
Q  66 atagcctctatttgataacattttgtagtaaatagtgtatc 106  Q
    ||||||||||||||| |||| |||||| |||||||||||||    
T  4329 atagcctctatttgacaacactttgtactaaatagtgtatc 4289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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