View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5863-22 (Length: 110)
Name: Solexa-NF5863-22
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5863-22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 43; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 12366642 - 12366684
Alignment:
| Q |
68 |
tctcaacccatcactctcacctcagccttgtctcttccaagat |
110 |
Q |
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| T |
12366642 |
tctcaacccatcactctcacctcagccttgtctcttccaagat |
12366684 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 12346417 - 12346462
Alignment:
| Q |
65 |
acatctcaacccatcactctcacctcagccttgtctcttccaagat |
110 |
Q |
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| T |
12346417 |
acatctcaactcatcactctcacctcagccttgtctcttcgaagat |
12346462 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 9691682 - 9691719
Alignment:
| Q |
7 |
aatgatttggaagttgacttggtaaatagggtatgatc |
44 |
Q |
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| T |
9691682 |
aatgatttggaagttgacttggtaaatagggtatgatc |
9691719 |
T |
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