View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5863-26 (Length: 96)

Name: Solexa-NF5863-26
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5863-26
Solexa-NF5863-26
[»] chr2 (3 HSPs)
chr2 (8-96)||(35010519-35010607)
chr2 (66-96)||(21377206-21377236)
chr2 (65-92)||(24200757-24200784)
[»] chr4 (5 HSPs)
chr4 (65-96)||(20908770-20908801)
chr4 (66-96)||(54966993-54967023)
chr4 (66-95)||(487268-487297)
chr4 (66-93)||(17315431-17315458)
chr4 (65-96)||(35894586-35894617)
[»] chr7 (5 HSPs)
chr7 (66-96)||(3469312-3469342)
chr7 (66-96)||(19266422-19266452)
chr7 (66-94)||(14099139-14099167)
chr7 (66-94)||(14409156-14409184)
chr7 (65-92)||(14732954-14732981)
[»] chr6 (2 HSPs)
chr6 (66-96)||(13905112-13905142)
chr6 (66-93)||(9161098-9161125)
[»] chr1 (5 HSPs)
chr1 (66-96)||(18724678-18724708)
chr1 (66-96)||(52910212-52910242)
chr1 (66-93)||(14617036-14617063)
chr1 (65-96)||(28894663-28894694)
chr1 (66-93)||(33222982-33223009)
[»] scaffold0258 (1 HSPs)
scaffold0258 (66-93)||(13156-13183)
[»] chr5 (1 HSPs)
chr5 (69-96)||(23974752-23974779)
[»] chr3 (3 HSPs)
chr3 (69-96)||(22609760-22609787)
chr3 (65-96)||(28904937-28904968)
chr3 (66-93)||(53062035-53062062)


Alignment Details
Target: chr2 (Bit Score: 61; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-27
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 35010607 - 35010519
Alignment:
Q  8 ccacccgcattcgcagagtctgagaaggggtccctgnnnnnnnnatacaagagactgttttcagtcacatgacaacaactttaccgttg 96  Q
    |||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  35010607 ccactcgcattcgcagagtctgagaaggggtccctgttttttttatacaagagactgttttcagtcacatgacaacaactttaccgttg 35010519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 21377206 - 21377236
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  21377206 tttcagtcacatgacaacaactttaccgttg 21377236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 92
Target Start/End: Original strand, 24200757 - 24200784
Alignment:
Q  65 ttttcagtcacatgacaacaactttacc 92  Q
    ||||||||||||||||||||||||||||    
T  24200757 ttttcagtcacatgacaacaactttacc 24200784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 20908770 - 20908801
Alignment:
Q  65 ttttcagtcacatgacaacaactttaccgttg 96  Q
    ||||||||||||||||||||||||||||||||    
T  20908770 ttttcagtcacatgacaacaactttaccgttg 20908801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 54967023 - 54966993
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  54967023 tttcagtcacatgacaacaactttaccgttg 54966993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 487268 - 487297
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgtt 95  Q
    ||||||||||||||||||||||||||||||    
T  487268 tttcagtcacatgacaacaactttaccgtt 487297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Original strand, 17315431 - 17315458
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  17315431 tttcagtcacatgacaacaactttaccg 17315458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 35894586 - 35894617
Alignment:
Q  65 ttttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||| |||||||||||||||||||    
T  35894586 ttttcagtcacaggacaacaactttaccgttg 35894617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 3469312 - 3469342
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  3469312 tttcagtcacatgacaacaactttaccgttg 3469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 19266452 - 19266422
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  19266452 tttcagtcacatgacaacaactttaccgttg 19266422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 14099139 - 14099167
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgt 94  Q
    |||||||||||||||||||||||||||||    
T  14099139 tttcagtcacatgacaacaactttaccgt 14099167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 14409156 - 14409184
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgt 94  Q
    |||||||||||||||||||||||||||||    
T  14409156 tttcagtcacatgacaacaactttaccgt 14409184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 92
Target Start/End: Original strand, 14732954 - 14732981
Alignment:
Q  65 ttttcagtcacatgacaacaactttacc 92  Q
    ||||||||||||||||||||||||||||    
T  14732954 ttttcagtcacatgacaacaactttacc 14732981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 13905112 - 13905142
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  13905112 tttcagtcacatgacaacaactttaccgttg 13905142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Complemental strand, 9161125 - 9161098
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  9161125 tttcagtcacatgacaacaactttaccg 9161098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 18724678 - 18724708
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  18724678 tttcagtcacatgacaacaactttaccgttg 18724708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 52910242 - 52910212
Alignment:
Q  66 tttcagtcacatgacaacaactttaccgttg 96  Q
    |||||||||||||||||||||||||||||||    
T  52910242 tttcagtcacatgacaacaactttaccgttg 52910212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Complemental strand, 14617063 - 14617036
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  14617063 tttcagtcacatgacaacaactttaccg 14617036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 28894663 - 28894694
Alignment:
Q  65 ttttcagtcacatgacaacaactttaccgttg 96  Q
    ||||||||||||||||||||||||||| ||||    
T  28894663 ttttcagtcacatgacaacaactttactgttg 28894694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Complemental strand, 33223009 - 33222982
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  33223009 tttcagtcacatgacaacaactttaccg 33222982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Original strand, 13156 - 13183
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  13156 tttcagtcacatgacaacaactttaccg 13183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 96
Target Start/End: Complemental strand, 23974779 - 23974752
Alignment:
Q  69 cagtcacatgacaacaactttaccgttg 96  Q
    ||||||||||||||||||||||||||||    
T  23974779 cagtcacatgacaacaactttaccgttg 23974752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 96
Target Start/End: Complemental strand, 22609787 - 22609760
Alignment:
Q  69 cagtcacatgacaacaactttaccgttg 96  Q
    ||||||||||||||||||||||||||||    
T  22609787 cagtcacatgacaacaactttaccgttg 22609760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 28904968 - 28904937
Alignment:
Q  65 ttttcagtcacatgacaacaactttaccgttg 96  Q
    |||| |||||||||||||||||||||||||||    
T  28904968 tttttagtcacatgacaacaactttaccgttg 28904937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 93
Target Start/End: Complemental strand, 53062062 - 53062035
Alignment:
Q  66 tttcagtcacatgacaacaactttaccg 93  Q
    ||||||||||||||||||||||||||||    
T  53062062 tttcagtcacatgacaacaactttaccg 53062035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University