View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5863-27 (Length: 95)

Name: Solexa-NF5863-27
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5863-27
Solexa-NF5863-27
[»] chr3 (3 HSPs)
chr3 (1-95)||(29577344-29577438)
chr3 (22-95)||(50173324-50173397)
chr3 (51-95)||(475117-475161)
[»] chr6 (4 HSPs)
chr6 (51-95)||(28478676-28478720)
chr6 (51-95)||(29791131-29791175)
chr6 (23-95)||(32053954-32054026)
chr6 (20-95)||(24824975-24825050)
[»] chr4 (4 HSPs)
chr4 (51-95)||(4068298-4068342)
chr4 (10-95)||(26009752-26009837)
chr4 (28-72)||(36860391-36860435)
chr4 (51-95)||(50890769-50890813)
[»] chr7 (1 HSPs)
chr7 (47-95)||(26041920-26041968)
[»] chr8 (2 HSPs)
chr8 (28-95)||(14548236-14548302)
chr8 (22-95)||(13478503-13478576)
[»] chr5 (1 HSPs)
chr5 (57-95)||(2249204-2249242)
[»] chr2 (1 HSPs)
chr2 (21-95)||(42088434-42088508)
[»] chr1 (1 HSPs)
chr1 (55-95)||(1058987-1059027)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 3e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29577438 - 29577344
Alignment:
Q  1 gatgaacccatatttttagaaaaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||||||||||||  ||||| |||||| ||| ||||||  ||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  29577438 gatgaacccatatttttagggaaatgttaacaagtgctctcaagacactagttaagaaattaaaagtagaaactttatcttgaaaattgtgtatt 29577344  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 50173324 - 50173397
Alignment:
Q  22 aaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||||| |||| | | || ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  50173324 aaatgctaacaagtgcctttagggcactagttaagaaactaaaagtagaatctttatcttggaaattgtgtatt 50173397  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 475117 - 475161
Alignment:
Q  51 gttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  475117 gttaagaaactaaaagtagaaaccttatcttagaaattgtatatt 475161  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 28478720 - 28478676
Alignment:
Q  51 gttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  28478720 gttaacaaacttaaagtagaaactttatcttagaaattgtgtatt 28478676  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 29791175 - 29791131
Alignment:
Q  51 gttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||    
T  29791175 gttaacaaacttaaagtagaaactttatcttagaaattgtgtatt 29791131  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 32054026 - 32053954
Alignment:
Q  23 aatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||||||| | | | |||| | ||||||||||| ||||| |||||||||| || |||||||||||||    
T  32054026 aatgctaacaaatgtctttagggtatttgttaagaaactcaaagttgaaactttatgttggaaattgtgtatt 32053954  T

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Target: chr6; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 24825050 - 24824975
Alignment:
Q  20 aaaaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||||||| || ||| | ||||||  | |||||  | |||||||||| ||| ||||||||||||||||||    
T  24825050 aaaaatgctaacaagtgtccttacggtacttataaagaagtttaaagtagaaattttgtcttagaaattgtgtatt 24824975  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 4068298 - 4068342
Alignment:
Q  51 gttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  4068298 gttaagaaactaaaagtagaaactttatcatggaaattgtgtatt 4068342  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 26009837 - 26009752
Alignment:
Q  10 atatttttagaaaaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||| |||||| |||||| |||||| |||  ||| | ||||||| | |||||| |||||||||||| ||| |||||||||    
T  26009837 atatttttaggaaaatgttaacaagtgcccttaagacacttgataagaaatttaaagtaaaaactttatcttggaatttgtgtatt 26009752  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 36860435 - 36860391
Alignment:
Q  28 taacaaatgccctcaaggtactagttaagaaactaaaagtagaaa 72  Q
    |||| |||||||||  || ||||||||||||||||||||||||||    
T  36860435 taaccaatgccctcggggcactagttaagaaactaaaagtagaaa 36860391  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 50890813 - 50890769
Alignment:
Q  51 gttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||| || ||||||||||||||||||| |||||| ||||||    
T  50890813 gttaagaagctcaaagtagaaactttatcttggaaattttgtatt 50890769  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 26041968 - 26041920
Alignment:
Q  47 actagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||| |||||||  ||||||||||||||||||||| |||||||||||||    
T  26041968 actaattaagaagttaaaagtagaaactttatcttggaaattgtgtatt 26041920  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 14548302 - 14548236
Alignment:
Q  28 taacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||| ||||| ||||| ||| ||||||||| | ||||||||||||||||||| ||| |||||||||    
T  14548302 taacaagtgccc-caaggcacttgttaagaaattcaaagtagaaactttatcttggaatttgtgtatt 14548236  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 13478503 - 13478576
Alignment:
Q  22 aaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||||||||||||| | | ||| || | ||||| |||||||||||| |||||||||| |  ||||||||||||    
T  13478503 aaatgctaacaaatgtctttaagatatttgttaaaaaactaaaagtaaaaactttatcctgtaaattgtgtatt 13478576  T

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Target: chr5 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 2249204 - 2249242
Alignment:
Q  57 aaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  2249204 aaactaaaagtagaaattttatcttaaaaattgtgtatt 2249242  T

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Target: chr2 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 42088434 - 42088508
Alignment:
Q  21 aaaatgctaacaaatgccctcaaggtactagttaagaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||||||||||| |||||| |||  | ||| ||||||||| ||| ||| ||||||||||| |||||||| ||||    
T  42088434 aaaatgctaacaagtgccctaaagacattagataagaaacttaaaatagtaactttatcttggaaattgtttatt 42088508  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 1059027 - 1058987
Alignment:
Q  55 agaaactaaaagtagaaactttatcttagaaattgtgtatt 95  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  1059027 agaaactaaaagtagaaacttaaccttaaaaattgtgtatt 1058987  T

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