View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5863-39 (Length: 43)

Name: Solexa-NF5863-39
Description: NF5863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5863-39
Solexa-NF5863-39
[»] chr8 (6 HSPs)
chr8 (1-43)||(21176325-21176367)
chr8 (5-37)||(39831769-39831801)
chr8 (5-43)||(15033777-15033815)
chr8 (1-35)||(34367630-34367664)
chr8 (5-35)||(34819630-34819660)
chr8 (5-35)||(35554595-35554625)
[»] chr7 (10 HSPs)
chr7 (5-43)||(13323041-13323079)
chr7 (5-43)||(47521989-47522027)
chr7 (4-43)||(22726725-22726764)
chr7 (5-35)||(5538571-5538601)
chr7 (5-43)||(16488380-16488418)
chr7 (5-43)||(16680466-16680504)
chr7 (5-43)||(17654702-17654740)
chr7 (5-43)||(27450699-27450737)
chr7 (5-35)||(37343257-37343287)
chr7 (5-35)||(41734735-41734765)
[»] chr6 (4 HSPs)
chr6 (5-43)||(2407243-2407281)
chr6 (5-43)||(31771074-31771112)
chr6 (5-43)||(2406035-2406073)
chr6 (1-35)||(22304233-22304267)
[»] chr5 (2 HSPs)
chr5 (1-43)||(8577551-8577593)
chr5 (5-35)||(5199767-5199797)
[»] chr4 (6 HSPs)
chr4 (5-43)||(8110158-8110196)
chr4 (5-43)||(50196337-50196375)
chr4 (5-43)||(50278161-50278199)
chr4 (2-43)||(40886642-40886683)
chr4 (5-35)||(50020718-50020748)
chr4 (5-43)||(51686121-51686159)
[»] chr3 (6 HSPs)
chr3 (1-43)||(20353544-20353586)
chr3 (5-43)||(41615268-41615306)
chr3 (5-43)||(44232718-44232756)
chr3 (5-35)||(6928132-6928162)
chr3 (5-35)||(48565876-48565906)
chr3 (5-43)||(50214175-50214213)
[»] chr1 (10 HSPs)
chr1 (5-43)||(21143936-21143974)
chr1 (5-43)||(50617905-50617943)
chr1 (4-37)||(16269809-16269842)
chr1 (4-35)||(45828581-45828612)
chr1 (1-35)||(95116-95150)
chr1 (1-35)||(13637020-13637054)
chr1 (5-43)||(19522290-19522328)
chr1 (1-35)||(26878712-26878746)
chr1 (1-35)||(47660875-47660909)
chr1 (5-35)||(52804874-52804904)
[»] chr2 (2 HSPs)
chr2 (1-35)||(15834259-15834293)
chr2 (5-43)||(36653508-36653546)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21176367 - 21176325
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21176367 ttctgaggccagcaaatgaagagccgatcattgcacatcagtg 21176325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 39831801 - 39831769
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcaca 37  Q
    |||||||||||||||||||| ||||||||||||    
T  39831801 gaggccagcaaatgaagagcagatcattgcaca 39831769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 15033815 - 15033777
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||| ||||||||||||| |||||||||| |||||||    
T  15033815 gaggcctgcaaatgaagagcagatcattgcagatcagtg 15033777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34367664 - 34367630
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  34367664 ttctgaggcctgcaaatgaagagcagatcattgca 34367630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 34819660 - 34819630
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  34819660 gaggccagcaaatgaagagcagatcattgca 34819630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 35554595 - 35554625
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  35554595 gaggccagcaaatgaagagcagatcattgca 35554625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 13323041 - 13323079
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  13323041 gaggccagcaaatgaagagcagatcattgcacaacagtg 13323079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 47522027 - 47521989
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  47522027 gaggccagcaaatgaagagcagatcattgcacagcagtg 47521989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 22726764 - 22726725
Alignment:
Q  4 tgaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||| ||||| ||||||||||||||||| |||||    
T  22726764 tgaggccagctaatgaggagccgatcattgcacaacagtg 22726725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 5538601 - 5538571
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  5538601 gaggccagcaaatgaagagcagatcattgca 5538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 16488380 - 16488418
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||  |||||||||||| |||||    
T  16488380 gaggccagcaaatgaagagtagatcattgcacagcagtg 16488418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 16680466 - 16680504
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||  |||||||||||| |||||    
T  16680466 gaggccagcaaatgaagagaagatcattgcacaacagtg 16680504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 17654702 - 17654740
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||  |||||||||||| |||||    
T  17654702 gaggccagcaaatgaagagaagatcattgcacaacagtg 17654740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 27450737 - 27450699
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||  |||||||||||| |||||    
T  27450737 gaggccagcaaatgaagagtagatcattgcacaacagtg 27450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 37343257 - 37343287
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  37343257 gaggccagcaaatgaagagcagatcattgca 37343287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 41734735 - 41734765
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  41734735 gaggccagcaaatgaagagcagatcattgca 41734765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 2407243 - 2407281
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  2407243 gaggccagcaaatgaagagcagatcattgcacagcagtg 2407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 31771074 - 31771112
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  31771074 gaggccagcaaatgaagagcagatcattgcacagcagtg 31771112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 2406073 - 2406035
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| ||||| ||||||| ||||    
T  2406073 gaggccagcaaatgaagagcagatcagtgcacataagtg 2406035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22304233 - 22304267
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  22304233 ttctgaggcctgcaaatgaagagcagatcattgca 22304267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8577593 - 8577551
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||| ||||||||||||| |||||||||||| |||||    
T  8577593 ttctgaggcctgcaaatgaagagcagatcattgcacagcagtg 8577551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 5199767 - 5199797
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  5199767 gaggccagcaaatgaagagcagatcattgca 5199797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 8110158 - 8110196
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  8110158 gaggccagcaaatgaagagcagatcattgcacagcagtg 8110196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 50196337 - 50196375
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  50196337 gaggccagcaaatgaagagcagatcattgcacagcagtg 50196375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 50278161 - 50278199
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  50278161 gaggccagcaaatgaagagcagatcattgcacagcagtg 50278199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 40886683 - 40886642
Alignment:
Q  2 tctgaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||| |||| |||||||||||| |||||    
T  40886683 tctgaggccagcaaatgaggagcagatcattgcacaccagtg 40886642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 50020748 - 50020718
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  50020748 gaggccagcaaatgaagagcagatcattgca 50020718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 51686121 - 51686159
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    ||||||| |||||||||||| |||||||||||| |||||    
T  51686121 gaggccaacaaatgaagagcagatcattgcacaacagtg 51686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20353544 - 20353586
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    ||||||||||| |||||||||||| |||||||||||| |||||    
T  20353544 ttctgaggccaacaaatgaagagcagatcattgcacagcagtg 20353586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 41615268 - 41615306
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  41615268 gaggccagcaaatgaagagcagatcattgcacaacagtg 41615306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 44232718 - 44232756
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  44232718 gaggccagcaaatgaaaagcagatcattgcacatcagtg 44232756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 6928132 - 6928162
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  6928132 gaggccagcaaatgaagagcagatcattgca 6928162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 48565876 - 48565906
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  48565876 gaggccagcaaatgaagagcagatcattgca 48565906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 50214213 - 50214175
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||| ||| |||||||||||| |||||    
T  50214213 gaggccagcaaatgaaaagcagatcattgcacagcagtg 50214175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 21143936 - 21143974
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  21143936 gaggccagcaaatgaagagcagatcattgcacagcagtg 21143974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 50617943 - 50617905
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  50617943 gaggccagcaaatgaagagcagatcattgcacaacagtg 50617905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 16269842 - 16269809
Alignment:
Q  4 tgaggccagcaaatgaagagccgatcattgcaca 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  16269842 tgaggccagcaaatgaagagcagatcattgcaca 16269809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 45828581 - 45828612
Alignment:
Q  4 tgaggccagcaaatgaagagccgatcattgca 35  Q
    ||||||||||||||||||||| ||||||||||    
T  45828581 tgaggccagcaaatgaagagcagatcattgca 45828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 95150 - 95116
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  95150 ttctgaggcctgcaaatgaagagcagatcattgca 95116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13637054 - 13637020
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  13637054 ttctgaggcctgcaaatgaagagcagatcattgca 13637020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 19522328 - 19522290
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    ||||||||||||| |||||| |||||||||||| |||||    
T  19522328 gaggccagcaaataaagagcagatcattgcacagcagtg 19522290  T

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Target: chr1; HSP #8
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26878712 - 26878746
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  26878712 ttctgaggcctgcaaatgaagagcagatcattgca 26878746  T

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Target: chr1; HSP #9
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47660875 - 47660909
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||||||  ||||||||||    
T  47660875 ttctgaggccagcaaatgaagagaagatcattgca 47660909  T

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Target: chr1; HSP #10
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 52804874 - 52804904
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||||||||||||| ||||||||||    
T  52804874 gaggccagcaaatgaagagcagatcattgca 52804904  T

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Target: chr2 (Bit Score: 27; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15834259 - 15834293
Alignment:
Q  1 ttctgaggccagcaaatgaagagccgatcattgca 35  Q
    |||||||||| ||||||||||||| ||||||||||    
T  15834259 ttctgaggcctgcaaatgaagagcagatcattgca 15834293  T

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Target: chr2; HSP #2
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 36653546 - 36653508
Alignment:
Q  5 gaggccagcaaatgaagagccgatcattgcacatcagtg 43  Q
    ||||||||||| |||||||| |||||||||||| |||||    
T  36653546 gaggccagcaattgaagagcagatcattgcacaacagtg 36653508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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