View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5864-16 (Length: 67)
Name: Solexa-NF5864-16
Description: NF5864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5864-16 |
 | |
|
| [»] scaffold0198 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0198 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18448 - 18415
Alignment:
| Q |
1 |
ttgaagtatttaatcgtggtatatagcaatgctg |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
18448 |
ttgaagtatttaatcgtggtatatagcaaagctg |
18415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14959205 - 14959172
Alignment:
| Q |
1 |
ttgaagtatttaatcgtggtatatagcaatgctg |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
14959205 |
ttgaagtatttaatcgtggtatatagcaaagctg |
14959172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39491110 - 39491077
Alignment:
| Q |
1 |
ttgaagtatttaatcgtggtatatagcaatgctg |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
39491110 |
ttgaagtatttaatcgtggtatatagcaaagctg |
39491077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2224074 - 2224041
Alignment:
| Q |
1 |
ttgaagtatttaatcgtggtatatagcaatgctg |
34 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
2224074 |
ttgaaatatttaatcgtggtatatagcaatgctg |
2224041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University