View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5865-1 (Length: 295)
Name: Solexa-NF5865-1
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5865-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 1885708 - 1885478
Alignment:
| Q |
8 |
aaatttgcttccaattaccatcaattccgtgctgatgagaatttacatccttttccatgatgctcctgtatgcgctacgaacggaatagatactgttttt |
107 |
Q |
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| T |
1885708 |
aaatttgcttccaattaccatcaattccgtgctgatgagaatttacatccttttccatgatgctcctgtatgcgctacgaacggaatagatactgttttt |
1885609 |
T |
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| Q |
108 |
ctcaagtttccacacacatctatcttgctgcgcggtagaaatcagaggtgttctgcgaatttgataagctgaaatgttgtcaaataaataatattctcca |
207 |
Q |
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| T |
1885608 |
ctcaagtttccacacacatctatcttgctgcgcggtagaaatcagaggtgttctgcgaatttgataagctgaaatgttgtcaaataaataatattctcca |
1885509 |
T |
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| Q |
208 |
tctgccattgtttggtgtatcctttgcttct |
238 |
Q |
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| T |
1885508 |
tctgccattgtttggtgtatcctttgtttct |
1885478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 40885854 - 40885906
Alignment:
| Q |
243 |
ttaggtcatataaaattgatttatgacctaatgctttgtcctagtatatgatc |
295 |
Q |
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| T |
40885854 |
ttaggtcatataaaattgatttatgacctaatgctttgtcctagtatatgatc |
40885906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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