View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5865-4 (Length: 135)

Name: Solexa-NF5865-4
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5865-4
Solexa-NF5865-4
[»] chr5 (13 HSPs)
chr5 (11-132)||(37704028-37704149)
chr5 (25-132)||(37437075-37437182)
chr5 (25-132)||(37534480-37534587)
chr5 (25-132)||(37595704-37595811)
chr5 (25-132)||(37641252-37641359)
chr5 (25-132)||(37712998-37713105)
chr5 (25-132)||(37825269-37825376)
chr5 (13-132)||(37698155-37698274)
chr5 (11-125)||(37381015-37381129)
chr5 (11-132)||(37399500-37399621)
chr5 (11-132)||(37391634-37391755)
chr5 (11-132)||(37411988-37412109)
chr5 (44-130)||(37430150-37430236)
[»] chr3 (1 HSPs)
chr3 (11-132)||(14554392-14554513)
[»] chr4 (2 HSPs)
chr4 (30-132)||(16841549-16841651)
chr4 (11-132)||(24216416-24216537)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 5e-63; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 37704028 - 37704149
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704028 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 37704127  T
Q  111 gtgacaccatcccactcgcaac 132  Q
    ||||||||||||||||||||||    
T  37704128 gtgacaccatcccactcgcaac 37704149  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37437075 - 37437182
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37437075 agatggtgctattgggatgtaattcacctttcagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37437174  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37437175 ctcacaac 37437182  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37534480 - 37534587
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37534480 agatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37534579  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37534580 ctcacaac 37534587  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37595704 - 37595811
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37595704 agatggtgctattgggatgtaattcacctttaagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37595803  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37595804 ctcacaac 37595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37641252 - 37641359
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37641252 agatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37641351  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37641352 ctcacaac 37641359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37712998 - 37713105
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37712998 agatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37713097  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37713098 ctcacaac 37713105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 37825269 - 37825376
Alignment:
Q  25 agattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatccca 124  Q
    |||| |||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  37825269 agatggtgctattgggatgtaattcaccttttagattgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcacgtgacaccatccca 37825368  T
Q  125 ctcgcaac 132  Q
    ||| ||||    
T  37825369 ctcacaac 37825376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 9e-31
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 37698155 - 37698274
Alignment:
Q  13 gtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgt 112  Q
    ||||||||| | |||| |||||||| || |||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||| | ||||| |||||    
T  37698155 gtctaagctggaagatagtgctattgggatgtaattcacctttcaaattgttgcaactgaggtccaaaccaatcacgtaatccgactcagtgtcacacgt 37698254  T
Q  113 gacaccatcccactcgcaac 132  Q
    |||||||||||||| |||||    
T  37698255 gacaccatcccacttgcaac 37698274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 37381129 - 37381015
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    ||||||||||| | ||||||||||||| || ||||||||||| ||||||||| |||||||||| |||| ||||||||| ||||| |||| || |||||||    
T  37381129 gtgtctaagctggaagattgtgctattgggatgtaattcaccattcagattgctgcaactgaggtccagaccaatcacatgatctgacatggagtcgcac 37381030  T
Q  111 gtgacaccatcccac 125  Q
    |||||||||||||||    
T  37381029 gtgacaccatcccac 37381015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 37399621 - 37399500
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    |||||||||||   ||||  ||||||| || |||||||||||||| || |||||||||||||| |||| ||||||||||||||| |||| ||||||||||    
T  37399621 gtgtctaagctgaaagatgatgctattgggatgtaattcaccttttagtttgttgcaactgaggtccagaccaatcacgtgatctgacatggtgtcgcac 37399522  T
Q  111 gtgacaccatcccactcgcaac 132  Q
    ||||||||||||||||| ||||    
T  37399521 gtgacaccatcccactcacaac 37399500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 37391755 - 37391634
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    |||||||||||   |||| |||||||| || ||||| ||||| |||| ||||||||||||||| || |   ||||||||||||| |||| ||||||||||    
T  37391755 gtgtctaagctgaaagatagtgctattgggatgtaaatcaccattcaaattgttgcaactgaggtctagttcaatcacgtgatctgacatggtgtcgcac 37391656  T
Q  111 gtgacaccatcccactcgcaac 132  Q
    |||||||||||||||| |||||    
T  37391655 gtgacaccatcccacttgcaac 37391634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 37412109 - 37411988
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    |||| |||| ||| |||| ||||||||  | |||||||||||||| ||||||||||| || || |||||||||||||| |||||  | ||||||||||||    
T  37412109 gtgtttaagtttgaagatagtgctattgagatgtaattcacctttaagattgttgcacctaaggtccaaaccaatcacatgatccaaaacggtgtcgcac 37412010  T
Q  111 gtgacaccatcccactcgcaac 132  Q
     ||||||||| |||||||||||    
T  37412009 atgacaccataccactcgcaac 37411988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 37430150 - 37430236
Alignment:
Q  44 taattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatcccactcgca 130  Q
    ||||||||| ||||||||||||||||| || |||| ||||||||| | |||  ||| | ||||||||||||||||||||||||||||    
T  37430150 taattcaccgttcagattgttgcaactaaggtccagaccaatcacataatcgtacatgatgtcgcacgtgacaccatcccactcgca 37430236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 14554392 - 14554513
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    ||||||||||| | |||| ||||||||||| ||||||||||| |||| |||||||||||| || || |   ||||||||||| | || | ||||||||||    
T  14554392 gtgtctaagctggaagatagtgctattaggatgtaattcaccattcaaattgttgcaactaaggtctagttcaatcacgtgacctgatatggtgtcgcac 14554491  T
Q  111 gtgacaccatcccactcgcaac 132  Q
    ||||||||||||||||||||||    
T  14554492 gtgacaccatcccactcgcaac 14554513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 16841651 - 16841549
Alignment:
Q  30 gtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcacgtgacaccatcccactcgc 129  Q
    |||||||| || |||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||  | ||||| ||||||||||||||||||| ||    
T  16841651 gtgctattgggatgtaattcacctttcaaattgttgcaactgaggtccaaaccaaccacgtaatctgattcagtgtcacacgtgacaccatcccacttgc 16841552  T
Q  130 aac 132  Q
    |||    
T  16841551 aac 16841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 24216537 - 24216416
Alignment:
Q  11 gtgtctaagcttgtagattgtgctattaggttgtaattcacctttcagattgttgcaactgagatccaaaccaatcacgtgatcagacacggtgtcgcac 110  Q
    ||||||||||||| |||| |||| ||| || ||||| ||||||||||||||||||||||| || |||| ||||||||||| ||  |||   ||||| |||    
T  24216537 gtgtctaagcttgaagatagtgcaatttggatgtaactcacctttcagattgttgcaactaaggtccagaccaatcacgtaatttgacctagtgtcacac 24216438  T
Q  111 gtgacaccatcccactcgcaac 132  Q
     |||| ||||||||||||||||    
T  24216437 atgaccccatcccactcgcaac 24216416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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