View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5865-5 (Length: 135)

Name: Solexa-NF5865-5
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5865-5
Solexa-NF5865-5
[»] chr5 (8 HSPs)
chr5 (10-135)||(1033700-1033825)
chr5 (10-135)||(1071429-1071554)
chr5 (10-127)||(1065710-1065827)
chr5 (23-135)||(1044087-1044199)
chr5 (10-132)||(1640731-1640853)
chr5 (37-132)||(1053348-1053443)
chr5 (38-135)||(1058610-1058707)
chr5 (38-106)||(1046699-1046767)
[»] chr3 (2 HSPs)
chr3 (48-135)||(44171260-44171347)
chr3 (48-135)||(44191556-44191643)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 2e-65; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 1033825 - 1033700
Alignment:
Q  10 tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033825 tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc 1033726  T
Q  110 aaatcgacaacgattctcaagggatc 135  Q
    ||||||||||||||||||||||||||    
T  1033725 aaatcgacaacgattctcaagggatc 1033700  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 1071554 - 1071429
Alignment:
Q  10 tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc 109  Q
    ||||||||| | |||||||||  || ||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||| |||||||||||||| ||    
T  1071554 tggagtctccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagc 1071455  T
Q  110 aaatcgacaacgattctcaagggatc 135  Q
    ||| |||||||| |||||||||||||    
T  1071454 aaaccgacaacggttctcaagggatc 1071429  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 1065827 - 1065710
Alignment:
Q  10 tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc 109  Q
    ||||||||| | |||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||    
T  1065827 tggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagc 1065728  T
Q  110 aaatcgacaacgattctc 127  Q
    ||||||||| || |||||    
T  1065727 aaatcgacagcggttctc 1065710  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 1044199 - 1044087
Alignment:
Q  23 ttctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacga 122  Q
    ||||| || ||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||| || |||||||||||||| | |||||||||||||    
T  1044199 ttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacga 1044100  T
Q  123 ttctcaagggatc 135  Q
    ||||| |||||||    
T  1044099 ttctcgagggatc 1044087  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 1640731 - 1640853
Alignment:
Q  10 tggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgc 109  Q
    ||||||||| | |||||  || ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||| ||    
T  1640731 tggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagc 1640830  T
Q  110 aaatcgacaacgattctcaaggg 132  Q
     ||||||||||| || |||||||    
T  1640831 gaatcgacaacggttttcaaggg 1640853  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 1053443 - 1053348
Alignment:
Q  37 caaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaaggg 132  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||| ||||||| ||||||  |||||| ||||||||| |||||||    
T  1053443 caaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaaggg 1053348  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 1058707 - 1058610
Alignment:
Q  38 aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatc 135  Q
    ||||||||||||||||||||||  ||| ||||| |||||||||||  ||||||| ||||||||||||||  |||  |||||||| |||||||||||||    
T  1058707 aaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatc 1058610  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 1046767 - 1046699
Alignment:
Q  38 aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaa 106  Q
    ||||||||||| | | |||||||||||||| || || |||||||| |||||||| ||||||| ||||||    
T  1046767 aaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaa 1046699  T

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Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 44171260 - 44171347
Alignment:
Q  48 aatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatc 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| || ||||| |||||||    
T  44171260 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatc 44171347  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 44191556 - 44191643
Alignment:
Q  48 aatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatc 135  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| | ||| || ||||| |||||||    
T  44191556 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatc 44191643  T

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