View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5865-8 (Length: 70)
Name: Solexa-NF5865-8
Description: NF5865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5865-8 |
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Alignment Details
Target: chr5 (Bit Score: 61; Significance: 6e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 37704459 - 37704399
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattg |
68 |
Q |
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| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattg |
37704399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 37437525 - 37437469
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatca |
64 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatca |
37437469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 37698641 - 37698581
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattg |
68 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattg |
37698581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 16841203 - 16841238
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataaatagagg |
57 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
16841203 |
cttagtttcaggttatgtttcctatataaatagagg |
16841238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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