View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-11 (Length: 143)
Name: Solexa-NF5866-11
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 1687643 - 1687501
Alignment:
| Q |
1 |
cccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgata |
100 |
Q |
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| T |
1687643 |
cccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgata |
1687544 |
T |
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| Q |
101 |
ggcttttcttatctcctcccaatacctcctcttatgttcatct |
143 |
Q |
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| T |
1687543 |
ggcttttcttatctcctcccaatacctcctcttatgttcatct |
1687501 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 41918726 - 41918623
Alignment:
| Q |
39 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
138 |
Q |
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| T |
41918726 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
41918627 |
T |
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| Q |
139 |
catc |
142 |
Q |
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| T |
41918626 |
catc |
41918623 |
T |
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