View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-17 (Length: 129)
Name: Solexa-NF5866-17
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-17 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 7e-56; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 37345289 - 37345165
Alignment:
| Q |
4 |
agggagcaatgtggttcttagcatgttaccaacaaaagacagaaaatctgcaggtgtgtaatatgcaggtgatggtccttcatttatgaaatagcccttt |
103 |
Q |
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| T |
37345289 |
agggagcaatgtggttcttagcatgttaccaacaaaagacagaaaatctgcaggtgtgtaatatgcaggtgatggtccttcatttatgaaatagcccttt |
37345190 |
T |
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| Q |
104 |
catgttatagtatattaatgaaagag |
129 |
Q |
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| T |
37345189 |
catg-tataatatattaatgcaagag |
37345165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 30056511 - 30056446
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgttatagtatattaatgaaagag |
129 |
Q |
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| T |
30056511 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatg-tataatatatttatgaaagag |
30056446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 30680709 - 30680774
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgttatagtatattaatgaaagag |
129 |
Q |
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| T |
30680709 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatg-tataatatatttatgaaagag |
30680774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 30716878 - 30716943
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgttatagtatattaatgaaagag |
129 |
Q |
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| T |
30716878 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatg-tataatatatttatgaaagag |
30716943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 30746234 - 30746169
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgttatagtatattaatgaaagag |
129 |
Q |
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| T |
30746234 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatg-tataatatatttatgaaagag |
30746169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 30432652 - 30432607
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgt |
108 |
Q |
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| T |
30432652 |
aatatgcaggtgatggtccttcatttatgaaatagccgtttcatgt |
30432607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 30433437 - 30433378
Alignment:
| Q |
4 |
agggagcaatgtggttcttagcatgttaccaacaaaagacagaaaatctgcaggtgtgta |
63 |
Q |
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| T |
30433437 |
agggagcactgtgatgcttggcatgttaccaaccaaagacagaaaatctgcaggtgtgta |
30433378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 30480887 - 30480851
Alignment:
| Q |
27 |
tgttaccaacaaaagacagaaaatctgcaggtgtgta |
63 |
Q |
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| T |
30480887 |
tgttaccaaccaaagacagaaaatctgcaggtgtgta |
30480851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 30480104 - 30480059
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgt |
108 |
Q |
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| T |
30480104 |
aatatgcaggttatgatccttcatttatgaaatagtcccttcatgt |
30480059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 20302116 - 20302174
Alignment:
| Q |
4 |
agggagcaatgtggttcttagcatgttaccaacaaaagacagaaaatctgcaggtgtgta |
63 |
Q |
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| T |
20302116 |
agggagcaatgtgatgcttagcatgttac-aaccaaagacagaaaatctgcaggtgtgta |
20302174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 20302928 - 20302973
Alignment:
| Q |
63 |
aatatgcaggtgatggtccttcatttatgaaatagccctttcatgt |
108 |
Q |
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| T |
20302928 |
aatatgcaggttatggttcttcatttatgaaatagtcccttcatgt |
20302973 |
T |
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