View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5866-19 (Length: 127)
Name: Solexa-NF5866-19
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 27328691 - 27328568
Alignment:
| Q |
4 |
cataggacagagctaaggtttgagggaggaagatgagaaattttagttgcctgcctttatcattagcagcaatgtggctcaccggtggaggagtatataa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27328691 |
cataggacagagctaaggtttgagggaggaagatgagaaattttagttgcctgcctttatcattagcagcaatgtggctcaccggtggaggagtataaaa |
27328592 |
T |
|
| Q |
104 |
acaccttcagatttaatgaatggt |
127 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27328591 |
acaccttcagatttaatgaatggt |
27328568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University