View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-20 (Length: 127)
Name: Solexa-NF5866-20
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-20 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 1688300 - 1688179
Alignment:
| Q |
5 |
acaattggtacatgcattttaaaattattttgacccaacaaaagaacttattactagaaattaacacttaaaagatatagtcatatttaatcaaaaagcc |
104 |
Q |
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| T |
1688300 |
acaattggtacatgcattttaaaattattttgacccaacaaaagaacttattactagaaattaacacttaaaagatatagtcatatttaatcaaaaagcc |
1688201 |
T |
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| Q |
105 |
attgatatctatgttgagcaaa |
126 |
Q |
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|||||||||||| ||||||||| |
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| T |
1688200 |
attgatatctattttgagcaaa |
1688179 |
T |
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