View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-21 (Length: 127)
Name: Solexa-NF5866-21
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-21 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 63330 - 63211
Alignment:
| Q |
8 |
gtaacaatttgatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
63330 |
gtaacaatttgatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaac |
63231 |
T |
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| Q |
108 |
catggtttagttattttagt |
127 |
Q |
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|||||||||||||||||||| |
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| T |
63230 |
catggtttagttattttagt |
63211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 21320469 - 21320588
Alignment:
| Q |
8 |
gtaacaatttgatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320469 |
gtaacaatttgatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaac |
21320568 |
T |
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| Q |
108 |
catggtttagttattttagt |
127 |
Q |
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|||||||||||||||||||| |
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| T |
21320569 |
catggtttagttattttagt |
21320588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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