View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-26 (Length: 116)
Name: Solexa-NF5866-26
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-26 |
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| [»] scaffold0069 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0069 (Bit Score: 104; Significance: 2e-52; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 15772 - 15887
Alignment:
| Q |
1 |
gcagagacggaagaaaaaagtgagcaaggaagatgaaagttctttgatgcaaaaaggatctagtacactatggtttttaatgagcaacttaatctcaacc |
100 |
Q |
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| T |
15772 |
gcagagacggaagaaaaaagtgagcaaggaagatgaaagttctttgatacaaaaaggatccagtacactatagtttttaatgagcaacttaatctcaacc |
15871 |
T |
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| Q |
101 |
gttaattaatatctaa |
116 |
Q |
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| T |
15872 |
gttaattaatatctaa |
15887 |
T |
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Target: chr2 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 13913359 - 13913446
Alignment:
| Q |
27 |
aggaagatgaaagttctttgatgcaaaa-aggatctagtacactatggtttttaatgagcaacttaatctcaaccgttaattaatatc |
113 |
Q |
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| T |
13913359 |
aggaagatgaaagttctttgatgcaaaagaggatccggtgcactatagtttttaatgagcaacttaatctcaaccgttaattaatatc |
13913446 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 19069146 - 19069239
Alignment:
| Q |
27 |
aggaagatgaaagttctt-tgatgcaaaaagga---tctagtacactatggtttttaatgagcaacttaatctcaaccgttaattaatatctaa |
116 |
Q |
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| T |
19069146 |
aggaagatgaaagtgcttctgatgcaaaaaggaagatccagtacactgtagtttttaatgacaaccttgatctcaaccgttaattaatatctaa |
19069239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 19068586 - 19068525
Alignment:
| Q |
55 |
aggatctagtacactatggtttttaatgagcaacttaatctcaaccgttaattaatatctaa |
116 |
Q |
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| T |
19068586 |
aggatccagtacactgtagtttttaatgaccaccttgatctcaaccgttaactaatatctaa |
19068525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 15044732 - 15044680
Alignment:
| Q |
64 |
tacactatggtttttaatgagcaacttaatctcaaccgttaattaatatctaa |
116 |
Q |
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| T |
15044732 |
tacactatagtgtttaatgagcaacttaatctcaatcgttaattaacatctaa |
15044680 |
T |
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