View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5866-7 (Length: 182)

Name: Solexa-NF5866-7
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5866-7
Solexa-NF5866-7
[»] chr3 (4 HSPs)
chr3 (8-182)||(47452297-47452474)
chr3 (72-182)||(11006352-11006462)
chr3 (72-176)||(11015921-11016025)
chr3 (80-176)||(11024933-11025029)
[»] chr4 (24 HSPs)
chr4 (71-182)||(7770981-7771092)
chr4 (73-180)||(7907904-7908011)
chr4 (75-176)||(7813061-7813162)
chr4 (72-176)||(7822547-7822651)
chr4 (74-174)||(48156825-48156925)
chr4 (71-174)||(7789666-7789769)
chr4 (73-176)||(7877299-7877402)
chr4 (75-176)||(7800218-7800319)
chr4 (71-182)||(7904609-7904720)
chr4 (75-175)||(45366618-45366718)
chr4 (104-182)||(7765231-7765309)
chr4 (73-175)||(49044626-49044728)
chr4 (110-182)||(45372447-45372519)
chr4 (72-175)||(33134223-33134326)
chr4 (80-175)||(48862827-48862922)
chr4 (81-175)||(48170986-48171080)
chr4 (71-176)||(7238116-7238221)
chr4 (110-175)||(49048996-49049061)
chr4 (108-174)||(48735713-48735779)
chr4 (110-176)||(50251204-50251270)
chr4 (105-174)||(48891020-48891089)
chr4 (80-176)||(50672106-50672202)
chr4 (73-176)||(7774225-7774328)
chr4 (73-176)||(48902529-48902632)
[»] chr8 (5 HSPs)
chr8 (101-176)||(12194908-12194983)
chr8 (101-176)||(12439336-12439411)
chr8 (101-182)||(12199914-12199995)
chr8 (101-182)||(12444342-12444423)
chr8 (109-181)||(15348477-15348549)
[»] chr5 (2 HSPs)
chr5 (116-175)||(29712866-29712925)
chr5 (119-168)||(29687676-29687725)
[»] chr1 (1 HSPs)
chr1 (110-174)||(24322078-24322142)
[»] chr6 (1 HSPs)
chr6 (105-175)||(21015387-21015457)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 9e-81; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 47452474 - 47452297
Alignment:
Q  8 aagttgaccagaacgatgacaaagaacggtggtaaaggagga---agacttattgagacggagatcttgtatctacctcttgaattgataatccagatcc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47452474 aagttgaccagaacgatgacaaagaacggtggtaaaggaggaggaagacttattgagacggagatcttgtatctacctcttgaattgataatccagatct 47452375  T
Q  105 tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcctc 182  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47452374 tggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctc 47452297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 11006462 - 11006352
Alignment:
Q  72 tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 171  Q
    ||||||| |||| ||||||||| || || ||| |||||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  |||||||    
T  11006462 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 11006363  T
Q  172 ctctgctcctc 182  Q
    ||||| |||||    
T  11006362 ctctgatcctc 11006352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 11016025 - 11015921
Alignment:
Q  72 tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 171  Q
    ||||||| |||| |||||||||||| || ||| |||||||||| ||||||||||||||  |||| ||||| ||| ||| |||||||| |||  |||||||    
T  11016025 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttat 11015926  T
Q  172 ctctg 176  Q
    |||||    
T  11015925 ctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 11025029 - 11024933
Alignment:
Q  80 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 176  Q
    |||| ||||||||| || || ||| |||||||||| ||||||||||||||  |||| ||||| ||| ||| ||||||||||||  ||||||||||||    
T  11025029 cctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 4e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 7770981 - 7771092
Alignment:
Q  71 ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta 170  Q
    |||||||| |||| |||| | |||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| |||||||||||||    
T  7770981 ttgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctctta 7771080  T
Q  171 tctctgctcctc 182  Q
    |||||| |||||    
T  7771081 tctctgatcctc 7771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 7907904 - 7908011
Alignment:
Q  73 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 172  Q
    |||||| |||| |||||||||  ||||||||||  |||||||||||||||||||||||  ||| |||||||   ||  ||||||||||||||||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  173 tctgctcc 180  Q
    ||||||||    
T  7908004 tctgctcc 7908011  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 7813061 - 7813162
Alignment:
Q  75 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    |||| |||| ||| ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  175 tg 176  Q
    ||    
T  7813161 tg 7813162  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 7822547 - 7822651
Alignment:
Q  72 tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 171  Q
    ||||||| |||| | | ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| |||||||||||||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T
Q  172 ctctg 176  Q
    |||||    
T  7822647 ctctg 7822651  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 48156925 - 48156825
Alignment:
Q  74 tatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatct 173  Q
    ||||| || |||||||||||||| || ||||| ||  |||| ||||||||||||||| |||| ||||||||| ||| |||||| ||||||||||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  174 c 174  Q
    |    
T  48156825 c 48156825  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 7789666 - 7789769
Alignment:
Q  71 ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta 170  Q
    |||||||| |||| |||| |||||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| ||||||||| |||    
T  7789666 ttgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctttta 7789765  T
Q  171 tctc 174  Q
    ||||    
T  7789766 tctc 7789769  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 7877299 - 7877402
Alignment:
Q  73 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 172  Q
    |||||| |||| ||||||||| ||||| |||||| |  |||||| ||||||||||||| |||| ||||| ||||||| ||||  ||||||||||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  173 tctg 176  Q
    ||||    
T  7877399 tctg 7877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 7800218 - 7800319
Alignment:
Q  75 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    |||| |||| ||| ||||||||||  ||| ||||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  175 tg 176  Q
    ||    
T  7800318 tg 7800319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 7904609 - 7904720
Alignment:
Q  71 ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta 170  Q
    |||||||| |||| ||||||||| || || ||| || || ||||||| |||||||||||| |||| ||||| ||  ||| ||||| ||||||||||||||    
T  7904609 ttgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctctta 7904708  T
Q  171 tctctgctcctc 182  Q
    |||||| |||||    
T  7904709 tctctgatcctc 7904720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  75 atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    |||| |||| ||||||||| ||||| |||||  | ||||| || |||||||||||| |||| ||||||||| ||| |||||  |||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  175 t 175  Q
    |    
T  45366618 t 45366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 7765231 - 7765309
Alignment:
Q  104 ctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcctc 182  Q
    ||||||||||| ||||||||||||||  ||   ||||||||||||| ||||| |||||||||| ||||||||| |||||    
T  7765231 ctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctc 7765309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 49044728 - 49044626
Alignment:
Q  73 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 172  Q
    |||||| |||| ||| ||||| ||||  || ||| |||||||||| |||| ||||||| |||| ||||||||  ||| ||||| ||||||||||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  173 tct 175  Q
    |||    
T  49044628 tct 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 45372519 - 45372447
Alignment:
Q  110 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcctc 182  Q
    ||||||||||||||||||||| |||| ||||| ||  ||| |||||| ||||||||| ||||||||| |||||    
T  45372519 aggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctc 45372447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 33134326 - 33134223
Alignment:
Q  72 tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 171  Q
    ||||||| |||| ||||||||| ||||  || |||||||| || ||||||||||||||| | || ||||| ||| ||| |||| | || |||||||||||    
T  33134326 tgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttat 33134227  T
Q  172 ctct 175  Q
    ||||    
T  33134226 ctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 48862827 - 48862922
Alignment:
Q  80 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 175  Q
    |||| ||||||||| ||||  |||||| | ||||| ||||||||||||||| | || ||||| ||| |||  ||||| ||||||||||||||||||    
T  48862827 cctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 48171080 - 48170986
Alignment:
Q  81 ctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 175  Q
    |||||||||||||| | || || ||| |||||||  |||||||||||||| |||| ||||| ||  ||| |||||| |||||| |||||||||||    
T  48171080 ctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct 48170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 7238221 - 7238116
Alignment:
Q  71 ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta 170  Q
    |||||||| |||| |||| | || ||||| || ||| |||||||||| |||||||||||| |  | ||||| ||  ||| |||||| |||||||||||||    
T  7238221 ttgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctctta 7238122  T
Q  171 tctctg 176  Q
    ||||||    
T  7238121 tctctg 7238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  110 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 175  Q
    ||||||| ||||| ||||||| |||| ||||||||  ||| ||||| |||||||||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 48735779 - 48735713
Alignment:
Q  108 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    ||||||| ||||||||||||||| | || ||||| ||  ||| |||||| |||||||||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 50251270 - 50251204
Alignment:
Q  110 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 176  Q
    |||||||| |||||| ||||| |||  || |||||  |||||||||| |||||||||||||||||||    
T  50251270 aggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctg 50251204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 48891020 - 48891089
Alignment:
Q  105 tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    ||||||||||  |||| ||||||||| |||| ||||| ||| ||| |||||| |||||||||||| ||||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc 48891089  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 50672106 - 50672202
Alignment:
Q  80 cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 176  Q
    ||||| |||||||||||| ||||| || | |||||  | || |||| ||||| | | ||||||||  |||||||||||||| ||||||| |||||||    
T  50672106 cctctcgaattgataatcgagatcttgctaaggttatcagtcaagtgtcttgcatgtttcaagtgtgtttctaagtcatggctttctctcatctctg 50672202  T

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Target: chr4; HSP #23
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 7774328 - 7774225
Alignment:
Q  73 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 172  Q
    |||||| |||| ||||||||| || || ||| || || || ||||||||||||||||| | |  ||||| ||  ||| ||||  ||||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  173 tctg 176  Q
    ||||    
T  7774228 tctg 7774225  T

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Target: chr4; HSP #24
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 48902529 - 48902632
Alignment:
Q  73 gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc 172  Q
    ||||||||||| ||||||||| ||||| ||  ||  | |||||||||| ||||||||  | || ||||| ||  ||| |||||| ||||||||||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  173 tctg 176  Q
    ||||    
T  48902629 tctg 48902632  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 12194908 - 12194983
Alignment:
Q  101 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 176  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||    
T  12194908 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 12439336 - 12439411
Alignment:
Q  101 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 176  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||    
T  12439336 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 12199914 - 12199995
Alignment:
Q  101 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcctc 182  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||  ||| |||||||||||||||||||||||||| |||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12199995  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 12444342 - 12444423
Alignment:
Q  101 atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcctc 182  Q
    |||||| ||||||||||||||||||||||| || | ||||| ||  ||| |||||||||||||||||||||||||| |||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12444423  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 15348477 - 15348549
Alignment:
Q  109 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct 181  Q
    |||||| ||||||||||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||| ||||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  116 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 175  Q
    ||||||||||||||| | || ||||||||| ||| ||||| |||||||||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 29687676 - 29687725
Alignment:
Q  119 gtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctct 168  Q
    |||||||||||| |||||||||||||  ||| |||||| |||||||||||    
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 24322078 - 24322142
Alignment:
Q  110 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc 174  Q
    ||||||| ||||||||||||| | || ||||| ||| ||| |||||| |||||||||||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 21015387 - 21015457
Alignment:
Q  105 tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 175  Q
    |||||||||| ||||| | ||||||| |||| ||||||||  ||| ||||| || ||||||||||||||||    
T  21015387 tgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct 21015457  T

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