View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-8 (Length: 181)
Name: Solexa-NF5866-8
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 36670941 - 36670768
Alignment:
| Q |
8 |
agtttcaacaacacattttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaacttacctcaagattttgtcg |
107 |
Q |
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| T |
36670941 |
agtttcaacaacacattttcactttttagcctcttcttgaccattttatccctttggttttcattctccaatgcacaaaacttacctcaagattttgtcg |
36670842 |
T |
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| Q |
108 |
atgcccacaacacagctcgtgcacaagttggcgttgcaaacattacttgggacaatacagttgctacctatgct |
181 |
Q |
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| T |
36670841 |
atgcccacaacacagctcgtgcacaagttggcgttgcaaacattacttgggacaacacagttgctacctatgct |
36670768 |
T |
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Target: chr1 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 1772322 - 1772361
Alignment:
| Q |
42 |
tcttgaccattttatccctttggttttcattctccaatgc |
81 |
Q |
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| T |
1772322 |
tcttgaccatttgatccttgtggttttcattctccaatgc |
1772361 |
T |
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