View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5866-9 (Length: 148)
Name: Solexa-NF5866-9
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5866-9 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 63059 - 63206
Alignment:
| Q |
1 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
63059 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
63158 |
T |
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| Q |
101 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttca |
148 |
Q |
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| T |
63159 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttca |
63206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 21320740 - 21320593
Alignment:
| Q |
1 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21320740 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
21320641 |
T |
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| Q |
101 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttca |
148 |
Q |
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| T |
21320640 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttca |
21320593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44633722 - 44633767
Alignment:
| Q |
1 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgca |
46 |
Q |
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|||||||||||| |||||||||||||||| |||||| |||| |||| |
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| T |
44633722 |
gaagccaaacatcgacacaattttcattgcaaatcaaagttatgca |
44633767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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