View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5867-1 (Length: 256)
Name: Solexa-NF5867-1
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5867-1 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 13726134 - 13725889
Alignment:
| Q |
11 |
aagagttttggaatccctgttgctgttttcttaactcaagcttgttctgttaataccataaattttcatgcttttatgaaatggattgagttgccaattt |
110 |
Q |
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| T |
13726134 |
aagagttttgaaatccctgttgctgttttcttaactcaagcttgttctgttaataccataaattttcatgcttttatgaaatggattgagttgccgattt |
13726035 |
T |
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| Q |
111 |
cgaagagtgaaattgtgttacctggattgccaacgcttcaagatgctgatttgccttctttcttgtatcaatatggaacctatcctggttactttgatat |
210 |
Q |
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| T |
13726034 |
cgaagagtgaaattgtgttacctggattgccaacgcttcaagatgctgatttgccttctttcttgtatcaatatggaacctatcctggttactttgatat |
13725935 |
T |
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| Q |
211 |
tcttacaaaccaattttcaaagattgatcaagctgattgggttctt |
256 |
Q |
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| T |
13725934 |
tcttacaaaccaattttccaagattgatcaagttgattgggttctt |
13725889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 256
Target Start/End: Complemental strand, 13697093 - 13696865
Alignment:
| Q |
28 |
tgttgctgttttcttaactcaagcttgttctgttaataccataaattttcatgcttttatgaaatggattgagttgccaatttcgaagagtgaaattgtg |
127 |
Q |
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| T |
13697093 |
tgttgctgtttttttaactcaagcttgttgtgttaatagtataaattttcatgcttttaagggatggttggatttacctttgttggagaaagaaattgtg |
13696994 |
T |
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| Q |
128 |
ttacctggattgccaacgcttcaagatgctgatttgccttctttcttgtatcaatatggaacctatcctggttactttgatattcttacaaaccaatttt |
227 |
Q |
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| T |
13696993 |
ttacctggattgcctaagcttgaagctgctgatttgccttcttttttgtataaatatggaactcatcctggttactttgatattttgactaaccaatttt |
13696894 |
T |
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| Q |
228 |
caaagattgatcaagctgattgggttctt |
256 |
Q |
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| T |
13696893 |
caatgattgatcaagttgattgggttctt |
13696865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 13673072 - 13672974
Alignment:
| Q |
158 |
gatttgccttctttcttgtatcaatatggaacctatcctggttactttgatattcttacaaaccaattttcaaagattgatcaagctgattgggttctt |
256 |
Q |
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| T |
13673072 |
gatttgccttcttttttgtataaatatggatcttatccaggctactttgatatagttgtcaatcaattttcaaacattggtaaagctgattggattctt |
13672974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 13686840 - 13686889
Alignment:
| Q |
158 |
gatttgccttctttcttgtatcaatatggaacctatcctggttactttga |
207 |
Q |
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| T |
13686840 |
gatttgccttctttcttgtataaatatggatcctatccgggatactttga |
13686889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 13693304 - 13693341
Alignment:
| Q |
158 |
gatttgccttctttcttgtatcaatatggaacctatcc |
195 |
Q |
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| T |
13693304 |
gatttgccttctttcttgtataaatatggatcctatcc |
13693341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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