View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5867-13 (Length: 127)
Name: Solexa-NF5867-13
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5867-13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 38287582 - 38287704
Alignment:
| Q |
5 |
acaaggataatctaaccaataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttcta |
104 |
Q |
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| T |
38287582 |
acaaggataatctaatcaataattgtttaacttaagaatcgaattcggattcttccaaacgattcgtcattgctgaaactcattaaccacttgagttcta |
38287681 |
T |
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| Q |
105 |
ttgcttgattaggaatgcaaaat |
127 |
Q |
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| T |
38287682 |
ttgcttgattaggaatgcaaaat |
38287704 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 39844041 - 39843995
Alignment:
| Q |
53 |
attctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
99 |
Q |
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| T |
39844041 |
attctttcgaatgattcgtctttggtgaagttcatttaccacttgag |
39843995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13043501 - 13043549
Alignment:
| Q |
63 |
acgattcgtctttgctgaaattcattaaccacttgagttctattgcttg |
111 |
Q |
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| T |
13043501 |
acgattcgtccttgatgaaactcattaaccacttgagctcaattgcttg |
13043549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 34548585 - 34548528
Alignment:
| Q |
41 |
aatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
98 |
Q |
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| T |
34548585 |
aatcgaattcgggttattccgaacgactcgtctttgatgaagttcattaatcacttga |
34548528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 24363853 - 24363805
Alignment:
| Q |
51 |
ggattctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
99 |
Q |
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| T |
24363853 |
ggattcttccaaacgattcgtccttggtgaaattaattaaccacttgag |
24363805 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 8509732 - 8509644
Alignment:
| Q |
21 |
caataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctattgct |
109 |
Q |
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| T |
8509732 |
caataattgttttatctaagaatcgaatttggattctcccaaacaattcatcattgatgaaactcattaactacttgagttcgattgct |
8509644 |
T |
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