View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5867-2 (Length: 203)
Name: Solexa-NF5867-2
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5867-2 |
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| [»] chr1 (11 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 13161946 - 13162141
Alignment:
| Q |
8 |
agtgcagtgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttctt |
107 |
Q |
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| T |
13161946 |
agtgcagtatctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttctt |
13162045 |
T |
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| Q |
108 |
cattgctgcatttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
203 |
Q |
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| T |
13162046 |
cgttgctgcatttgctttgctcttcaccaagggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
13162141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 13130255 - 13130448
Alignment:
| Q |
10 |
tgcagtgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttcttca |
109 |
Q |
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| T |
13130255 |
tgcagtatctctaagatacttctcactgatttcaccctttccatatccttcattctttagggcttttaccatgcctaaaaaacattggtccatttcttca |
13130354 |
T |
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| Q |
110 |
ttgctgcatttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
203 |
Q |
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| T |
13130355 |
tcgctgcacttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
13130448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 13094826 - 13095019
Alignment:
| Q |
10 |
tgcagtgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttcttca |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13094826 |
tgcagtgtctctaagatacttctcactgatttctccctttccatgtccttcattctttagggcttttaccatgcctaaaaaacattggtacatttcttca |
13094925 |
T |
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| Q |
110 |
ttgctgcatttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
203 |
Q |
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| T |
13094926 |
tagctgcacttactttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttcttct |
13095019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 13067812 - 13067750
Alignment:
| Q |
139 |
ggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttctt |
201 |
Q |
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| T |
13067812 |
ggaaaatgttatgctttcatacaagaatcgttcaatattttcttgggctaccttgaacttctt |
13067750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 30367875 - 30367679
Alignment:
| Q |
8 |
agtgcagtgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttaccatgcctaaaaaacattggtccatttctt |
107 |
Q |
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|||||| |||||||||||||||||||||| | | || | |||||| | ||||| ||| | || |||||||| | | ||| || ||| |||||||||| |
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| T |
30367875 |
agtgcattgtctctaagatacttctcactcactccctcatttccagaaccttccttcatcagtgcttttacaaagttgaaataagattcatccatttctt |
30367776 |
T |
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| Q |
108 |
cattgctgc---atttgctttgctcttcaccatgggaaaatgttatactttcatacaagaatcggtcaagatattcttgggcaaccttgaacttctt |
201 |
Q |
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| T |
30367775 |
cactgctgctgcacttgcttttctcttcgcgtttggcaaatgttacactttcatacaagaatcggtcaagattttcttcagctaccttgtacttctt |
30367679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 13010797 - 13010840
Alignment:
| Q |
139 |
ggaaaatgttatactttcatacaagaatcggtcaagatattctt |
182 |
Q |
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| T |
13010797 |
ggaaaatgttatactttcatacaagaatcggtcaagattttctt |
13010840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 19727585 - 19727647
Alignment:
| Q |
15 |
tgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggctttta |
77 |
Q |
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| T |
19727585 |
tgtctctaagatacttctcattcatttccccctttccagatccttccttcattagtgctttta |
19727647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 13205015 - 13205058
Alignment:
| Q |
139 |
ggaaaatgttatactttcatacaagaatcggtcaagatattctt |
182 |
Q |
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| T |
13205015 |
ggaaaatgttatactttcatataagaatcggtcaagattttctt |
13205058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 13214251 - 13214314
Alignment:
| Q |
15 |
tgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggcttttac |
78 |
Q |
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| T |
13214251 |
tgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac |
13214314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 13101432 - 13101494
Alignment:
| Q |
15 |
tgtctctaagatacttctcactgatttccccctttccatatccttctttctttagggctttta |
77 |
Q |
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| T |
13101432 |
tgtctctaagatacttctcatccatttccccctttccagatccttccttcgttagtgctttta |
13101494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 13069824 - 13069781
Alignment:
| Q |
139 |
ggaaaatgttatactttcatacaagaatcggtcaagatattctt |
182 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
13069824 |
ggaaaatgttataccttcatacaagaaacggtcaagattttctt |
13069781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 31396310 - 31396260
Alignment:
| Q |
141 |
aaaatgttatactttcatacaagaatcggtcaagatattcttgggcaacct |
191 |
Q |
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| T |
31396310 |
aaaatgttatactgtcatacaagaatcggttaagattttcttgggctacct |
31396260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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