View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5867-7 (Length: 141)
Name: Solexa-NF5867-7
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5867-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 38288532 - 38288392
Alignment:
| Q |
1 |
ctaactctaattttacctatcnnnnnnngaaatgcggcaaattctatcaagaaaaatctattttaactcctctgagtgctaactctattttaccggaaaa |
100 |
Q |
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| T |
38288532 |
ctaactctaattttacctatcaaaaaaagaaatgtggcaaattctatcaagaaaaatctattttaactcctctgagtgctaactctattttaccggaaaa |
38288433 |
T |
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| Q |
101 |
cgaaatgtcttctattaaatcgaatcaataagcaattaagc |
141 |
Q |
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| T |
38288432 |
caaaatgtcttctatcaaatcgaatcaataagcaattaagc |
38288392 |
T |
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