View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5867-8 (Length: 141)
Name: Solexa-NF5867-8
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5867-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 6e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21214694 - 21214834
Alignment:
| Q |
1 |
cataggaaacaacataaatgaagcattgattaaaaaagtagcatcaatatctataggttacaacacacaatcaaaacataaaattaaaaacacaaattat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21214694 |
catatgaaacaacataaatgaagcattgattaaaaaagtagcatcaatatctataggttacaacacacaatcaaaacataaaattaaaaacacaaattat |
21214793 |
T |
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| Q |
101 |
acaactaagtcagaaaactattgggtagcatggctacccct |
141 |
Q |
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| T |
21214794 |
acaactaagtcagaaaactattgggtagcatggctacccct |
21214834 |
T |
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Target: chr4 (Bit Score: 53; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 22272585 - 22272493
Alignment:
| Q |
8 |
aacaacataaatgaagcattgattaaaaaagtagcatcaatatctataggttacaacacacaatcaaaacataaaattaaaaacacaaattat |
100 |
Q |
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| T |
22272585 |
aacaacataaatgaagcatatattaagaaagtatcatcaatatcaataggttacaacgcatgattcaaacataaaattaaaaacacaaattat |
22272493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 12787040 - 12786969
Alignment:
| Q |
29 |
attaaaaaagtagcatcaatatctataggttacaacacacaatcaaaacataaaattaaaaacacaaattat |
100 |
Q |
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||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||| | ||||||| |
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| T |
12787040 |
attaaaaaagtagtgacaatatccataggttacaacaattaatccaaacataaaattaaaaaaataaattat |
12786969 |
T |
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