View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5868-11 (Length: 127)
Name: Solexa-NF5868-11
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5868-11 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 116; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 1361613 - 1361494
Alignment:
| Q |
8 |
gaataatctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgggccacacatgtcttcaagtttgaaatttgttttgacttgatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361613 |
gaataatctcataaggtttgagatgaatggttgtttgaaaaggaacccattttggtgggccacacatgtcttcaagtttgaaatttgttttgacttgatc |
1361514 |
T |
|
| Q |
108 |
ctttggtggatcaaagaaac |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1361513 |
ctttggtggatcaaagaaac |
1361494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 1354726 - 1354608
Alignment:
| Q |
9 |
aataatctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgggccacacatgtcttcaagtttgaaatttgttttgacttgatcc |
108 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| || || |||||||||||||| ||||||| |
|
|
| T |
1354726 |
aataagctcataaggtttgagatgaatagttgtttgaaaaggaagccatttatgtgggccacatatgtcttgaatttcgaaatttgttttgatttgatcc |
1354627 |
T |
|
| Q |
109 |
tttggtggatcaaagaaac |
127 |
Q |
| |
|
|| ||| ||||||| |||| |
|
|
| T |
1354626 |
ttaggtcgatcaaaaaaac |
1354608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 20492390 - 20492338
Alignment:
| Q |
13 |
atctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgg |
65 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||| ||| |||||||| |
|
|
| T |
20492390 |
atctcataaggtttgaaatgaatgtttgttttgaaaggaacccactttggtgg |
20492338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14588681 - 14588626
Alignment:
| Q |
10 |
ataatctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgg |
65 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14588681 |
ataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtgg |
14588626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 14622339 - 14622284
Alignment:
| Q |
10 |
ataatctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgg |
65 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14622339 |
ataacctcgtaacgtttgagatgaatggttgtttggaaaggaacccattttggtgg |
14622284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 12846240 - 12846158
Alignment:
| Q |
9 |
aataatctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgggccacacatgtcttcaagtttgaaat |
91 |
Q |
| |
|
|||||||||||||||||| | | || || ||||||| ||||||| ||| ||| ||| ||||||||| |||||| | ||||||| |
|
|
| T |
12846240 |
aataatctcataaggtttcaaacgagtgtttgtttggaaaggaacccagttttgtgtgccacacatttcttcaggattgaaat |
12846158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 29954255 - 29954196
Alignment:
| Q |
13 |
atctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgggccacac |
72 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||| |||||||||| |||| |
|
|
| T |
29954255 |
atctcataaggtttgtaatgaatggatgtttgaaaaggaacccactttggtgggctacac |
29954196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 51370201 - 51370264
Alignment:
| Q |
13 |
atctcataaggtttgagatgaatggttgtttgaaaaggaagccattttggtgggccacacatgt |
76 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
51370201 |
atctcataaggtttgagataaacaattgtttcgaaaggaagccactttggtgggctacacatgt |
51370264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University