View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5868-15 (Length: 111)
Name: Solexa-NF5868-15
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5868-15 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 22472588 - 22472678
Alignment:
| Q |
21 |
tattcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacttagataatcacagtatcacacaattgaaagttgaataggatc |
111 |
Q |
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| T |
22472588 |
tattcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacatagataatcacagtatcacacaattgaaagttgaataggatc |
22472678 |
T |
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Target: scaffold0128 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 9118 - 9061
Alignment:
| Q |
24 |
tcaatatgtatcgatttgaaaaaacattatatgctaaaaatatacttagataatcaca |
81 |
Q |
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| T |
9118 |
tcaatatgtatcgatttgaaaaaacattatatgctaacaatatacatagataatcaca |
9061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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