View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5868-2 (Length: 220)
Name: Solexa-NF5868-2
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5868-2 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 41062006 - 41062209
Alignment:
| Q |
8 |
attttaccatttcgtaattatgttgacaaataaataacaatgaaactaattttaacaca--gaagaaagaaaacaaatcattacaatactagtgtagaaa |
105 |
Q |
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| T |
41062006 |
attttaccatttcataattatgttgacaaataaataacaatgaaactaattttaacacaaagaagaaagaaaacaaatcattacaatactagtgtagaaa |
41062105 |
T |
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| Q |
106 |
tcaagcaggtcacaaatacattcataagaaagaaaacatgaggcacgctatgaatatcaaatatgcatcatnnnnnnnccaacgaggagatcctgaatat |
205 |
Q |
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| T |
41062106 |
tcaagtaggtcacaaatacattcataggaaagaaaacatgaggcacactataaatatcaaatatgcatcataaaaaaaccaacgaggagatcctgaatat |
41062205 |
T |
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| Q |
206 |
tcat |
209 |
Q |
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|||| |
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| T |
41062206 |
tcat |
41062209 |
T |
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