View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5868-3 (Length: 218)
Name: Solexa-NF5868-3
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5868-3 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 2362003 - 2362185
Alignment:
| Q |
1 |
aggggagagtgtggaggagcagagaggggacagaaggtacgnnnnnnngtgagtgagacttgtgaactgtgtgggggcagataagaatgctttgaaattt |
100 |
Q |
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| T |
2362003 |
aggggagagtgaagaggagcagagaggggacagaaggtacgaaaaaaagtgagtgagacttgtgaactgtgtgggggcagataagaatgctttcaaattt |
2362102 |
T |
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| Q |
101 |
taacgaaagttcatgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttct |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2362103 |
taacgaaagttcatgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttct |
2362185 |
T |
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