View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5869-11 (Length: 55)
Name: Solexa-NF5869-11
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5869-11 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37166395 - 37166341
Alignment:
| Q |
1 |
cagagataccaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
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| T |
37166395 |
cagagataccaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
37166341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 12340447 - 12340493
Alignment:
| Q |
9 |
ccaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
12340447 |
ccaagccaattcctaacatgctgccataaagcaccaaaaaaatcaca |
12340493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8384918 - 8384864
Alignment:
| Q |
1 |
cagagataccaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8384918 |
cagagatgccaagccaattcctaacatggtgccataaagcaccaaaaatatcaca |
8384864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33808743 - 33808793
Alignment:
| Q |
1 |
cagagataccaagccaattcctaacatgttgccataaagcaccaaaaatat |
51 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33808743 |
cagagataccaagccaattcctaacatattgccataaagcaccaaaaatat |
33808793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 36182412 - 36182462
Alignment:
| Q |
5 |
gataccaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36182412 |
gataccaagccaatgcctaacatgttgccataaagcaccaaaaatatcaca |
36182462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44367781 - 44367746
Alignment:
| Q |
1 |
cagagataccaagccaattcctaacatgttgccata |
36 |
Q |
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|||||||| |||| |||||||||||||||||||||| |
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| T |
44367781 |
cagagatatcaagtcaattcctaacatgttgccata |
44367746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 6689390 - 6689437
Alignment:
| Q |
8 |
accaagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
6689390 |
accaagccaattccttacgtgctgccataaagcaccaaaaatatcaca |
6689437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 46189374 - 46189419
Alignment:
| Q |
10 |
caagccaattcctaacatgttgccataaagcaccaaaaatatcaca |
55 |
Q |
| |
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||||||||||||| | ||| |||||||||||||| ||||||||||| |
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| T |
46189374 |
caagccaattccttatatgctgccataaagcaccgaaaatatcaca |
46189419 |
T |
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