View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5869-13 (Length: 52)
Name: Solexa-NF5869-13
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5869-13 |
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Alignment Details
Target: chr5 (Bit Score: 43; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 2e-16
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37704459 - 37704417
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataa |
50 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcctatataa |
37704417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37437525 - 37437483
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataa |
50 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcctatataa |
37437483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37698641 - 37698599
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataa |
50 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcctatataa |
37698599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 16841203 - 16841231
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataa |
50 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16841203 |
cttagtttcaggttatgtttcctatataa |
16841231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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