View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5869-14 (Length: 50)

Name: Solexa-NF5869-14
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5869-14
Solexa-NF5869-14
[»] chr3 (1 HSPs)
chr3 (1-50)||(14553224-14553273)
[»] chr5 (9 HSPs)
chr5 (1-46)||(37702786-37702831)
chr5 (1-46)||(37594442-37594487)
chr5 (1-44)||(37392889-37392932)
chr5 (1-43)||(37711745-37711787)
chr5 (1-46)||(37400875-37400920)
chr5 (1-46)||(37639990-37640035)
chr5 (1-46)||(37435825-37435870)
chr5 (1-46)||(37696839-37696884)
chr5 (1-46)||(37824013-37824058)
[»] chr4 (1 HSPs)
chr4 (1-46)||(16842873-16842918)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14553273 - 14553224
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgctaact 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553273 tctttcacacaatagttttatttctatcaacattgatagcagtgctaact 14553224  T

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Target: chr5 (Bit Score: 46; Significance: 3e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-18
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37702831 - 37702786
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37702831 tctttcacacaatagttttatttctatcaacattgatagcagtgct 37702786  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37594487 - 37594442
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||    
T  37594487 tctttcacacaatagttttctttctatcaactttgatagcagtgct 37594442  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37392889 - 37392932
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtg 44  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  37392889 tctttcacacaatggttttctttctatcaacattgatagcagtg 37392932  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37711787 - 37711745
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagt 43  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  37711787 tctttcacacaatacttttctttctatcaacattgatagcagt 37711745  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37400875 - 37400920
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||    
T  37400875 tctttcccataatagttttctttctatcaacattgatagcagtgct 37400920  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37640035 - 37639990
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||    
T  37640035 tctttcccataatagttttctttctatcaacattgatagcagtgct 37639990  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37435870 - 37435825
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||| |||||||||||| |||||||||||| | |||||||||||    
T  37435870 tctttcgcacaatagttttctttctatcaacactaatagcagtgct 37435825  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37696884 - 37696839
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||||||||||| |||| || ||||||||| |||||||||||||    
T  37696884 tctttcacacaatacttttcttgctatcaacactgatagcagtgct 37696839  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37824058 - 37824013
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||||||||||| |||| || ||||||||| |||||||||||||    
T  37824058 tctttcacacaatacttttcttgctatcaacactgatagcagtgct 37824013  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16842873 - 16842918
Alignment:
Q  1 tctttcacacaatagttttatttctatcaacattgatagcagtgct 46  Q
    |||||||||||||| |||| |||||||||||| |||||||| ||||    
T  16842873 tctttcacacaatacttttctttctatcaacactgatagcattgct 16842918  T

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