View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5869-15 (Length: 42)
Name: Solexa-NF5869-15
Description: NF5869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5869-15 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 46975085 - 46975045
Alignment:
| Q |
2 |
atcatgacaaagcagtcagccatgatggtcataccatgtct |
42 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46975085 |
atcatgacaaagcagtcagccatgatggtcataccatgtct |
46975045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 46981072 - 46981032
Alignment:
| Q |
2 |
atcatgacaaagcagtcagccatgatggtcataccatgtct |
42 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46981072 |
atcatgacaaagcagtcaaccatgatggtcataccatgtct |
46981032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University