View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-10 (Length: 139)
Name: Solexa-NF5870-10
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-10 |
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| [»] scaffold0036 (4 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 83; Significance: 1e-39; HSPs: 4)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 64176 - 64073
Alignment:
| Q |
30 |
gtgatgagaaggtgaggtgttgttgtttgggattttcagcaggtgttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggattt |
129 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64176 |
gtgatgagaaggggaggtgttgttgtttgggattttcag------ttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggattt |
64083 |
T |
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| Q |
130 |
tgtttctgtg |
139 |
Q |
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|||||||||| |
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| T |
64082 |
tgtttctgtg |
64073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 69318 - 69215
Alignment:
| Q |
30 |
gtgatgagaaggtgaggtgttgttgtttgggattttcagcaggtgttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggattt |
129 |
Q |
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| T |
69318 |
gtgatgagaaggggaggtgttgttgtttgggattttcag------ttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggattt |
69225 |
T |
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| Q |
130 |
tgtttctgtg |
139 |
Q |
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| T |
69224 |
tgtttctgtg |
69215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 64407 - 64375
Alignment:
| Q |
2 |
ccaaggtccaggagttgaagggtgcctagtgat |
34 |
Q |
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| T |
64407 |
ccaagttccaggagttgaagggtgcctagtgat |
64375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 69548 - 69516
Alignment:
| Q |
2 |
ccaaggtccaggagttgaagggtgcctagtgat |
34 |
Q |
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| T |
69548 |
ccaagttccaggagttgaagggtgcctagtgat |
69516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 10296 - 10186
Alignment:
| Q |
30 |
gtgatgagaaggtgaggtgttgttgtttgggattttcagcaggtgt--tgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggat |
127 |
Q |
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||||||||||||||||||| ||||||| ||| |||| | ||||| ||||||||||||||||||||| ||||||||| | |||| || |||||||| |
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| T |
10296 |
gtgatgagaaggtgaggtgctgttgttaggggggttcaccgggtgtgatgattttttggagtggctttggtgtgagtag-tgggcgacagatgtttggat |
10198 |
T |
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| Q |
128 |
tttgtttctgtg |
139 |
Q |
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||||||| |||| |
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| T |
10197 |
tttgtttatgtg |
10186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 7424822 - 7424722
Alignment:
| Q |
30 |
gtgatgagaaggtgaggtgttgttgtttgggattttcagc--aggtgttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggat |
127 |
Q |
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|||||||||||| ||||| |||||||||| |||||||| | |||||| ||||||| | |||||||| |||||||||| | ||||||| |||||||| |
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| T |
7424822 |
gtgatgagaaggcgaggttacgttgtttgggtttttcagcgaatgtgttgcttttttgaattggctttggtgtgagtagcag-acgataggtgtttggat |
7424724 |
T |
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| Q |
128 |
tt |
129 |
Q |
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|| |
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| T |
7424723 |
tt |
7424722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 12220849 - 12220959
Alignment:
| Q |
30 |
gtgatgagaaggtgaggtgttgttgtttgggattttcagcag--gtgttgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggat |
127 |
Q |
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|||||||||||| | || | ||||||| ||| ||||||| || ||||| |||| ||||||||||||||| |||||||| | ||||| | |||||||| |
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| T |
12220849 |
gtgatgagaaggcggggagctgttgttagggtttttcagtagatgtgtttcttttctggagtggctttgatttgagtagcag-acgatatgtgtttggat |
12220947 |
T |
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| Q |
128 |
tttgtttctgtg |
139 |
Q |
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| T |
12220948 |
tttgtttttgtg |
12220959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 28006782 - 28006887
Alignment:
| Q |
34 |
tgagaaggtgaggtgttgttgtttgggattttcagcaggtgt--tgattttttggagtggctttgatgtgagtagccgcgcgataggcgtttggattttg |
131 |
Q |
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|||||||||||||| |||||||| ||| ||| ||| ||||| ||||||| | ||||||||||| ||||||||| || | |||||| ||||| |||||| |
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| T |
28006782 |
tgagaaggtgaggtattgttgttaggggtttg-agcgggtgtgatgattttcttgagtggctttggtgtgagtag-cgggtgataggtgtttgaattttg |
28006879 |
T |
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| Q |
132 |
tttctgtg |
139 |
Q |
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||| |||| |
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| T |
28006880 |
tttatgtg |
28006887 |
T |
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