View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5870-13 (Length: 133)
Name: Solexa-NF5870-13
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 102; Significance: 5e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 43970852 - 43970732
Alignment:
| Q |
8 |
tgagtgcgattaaaaaacatataatagaccagcaactccaattcaaaatctcaaaatagaaatctgttaaatttccaccatacaaacataaatttcattg |
107 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43970852 |
tgagtgagattaaaaaaaatataatagac-agcaactccaattcaaaatctcaaaatagaaatctgttaaatttctaccatacaaacataaatttcattg |
43970754 |
T |
|
| Q |
108 |
ctataatgctatgtacaaatca |
129 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43970753 |
ctataatgctatgtacaaatca |
43970732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University