View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-16 (Length: 124)
Name: Solexa-NF5870-16
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-16 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 6333378 - 6333483
Alignment:
| Q |
6 |
caacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgggttgatatcagcttgagactttcccttactt |
105 |
Q |
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| T |
6333378 |
caacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgggttgatatcagcttgagactttcccttactt |
6333477 |
T |
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| Q |
106 |
gtgttc |
111 |
Q |
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|||||| |
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| T |
6333478 |
gtgttc |
6333483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 6325911 - 6326006
Alignment:
| Q |
16 |
acaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgggttgatatcagcttgagactttcccttacttgtgttc |
111 |
Q |
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| T |
6325911 |
acaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcataattgttttgatatcagcttgagactttcccttacttgtgttc |
6326006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 6346501 - 6346556
Alignment:
| Q |
12 |
tgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatca |
67 |
Q |
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| T |
6346501 |
tgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatca |
6346556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 6242778 - 6242717
Alignment:
| Q |
7 |
aacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagccatcat |
68 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||| |||||| ||||||||||| |
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| T |
6242778 |
aacattgtcacaagcaccaaagctaggtagtaaagaaaaatagcgaaaaccaaagccatcat |
6242717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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