View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-19 (Length: 81)
Name: Solexa-NF5870-19
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-19 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 8e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-33
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 30935366 - 30935440
Alignment:
| Q |
7 |
agatttgccacttcaatttattctgctttggaaatatatcagaagtgctagtgaagcagcagcacatacagagat |
81 |
Q |
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| T |
30935366 |
agatttgccacttcaatttattctgctttggaaatatgtcagaagtgctagtgaagcagcagcacatacagagat |
30935440 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 30994275 - 30994346
Alignment:
| Q |
7 |
agatttgccacttcaatttattctgctttggaaatatatcagaagtgctagtgaagcagcagcacatacaga |
78 |
Q |
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| T |
30994275 |
agatttgccaattcaatttactctgctttggaaatgtttcagatgtgctagtgaagcagcaacacatacaga |
30994346 |
T |
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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 30965503 - 30965553
Alignment:
| Q |
31 |
gctttggaaatatatcagaagtgctagtgaagcagcagcacatacagagat |
81 |
Q |
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| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagat |
30965553 |
T |
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