View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-2 (Length: 288)
Name: Solexa-NF5870-2
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-2 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 43970159 - 43970403
Alignment:
| Q |
30 |
actacactgaagtggcaatagagagacgtaaataaagaaggagacagtggtggctaatgaacaacatactgcaaagctacgttgacggttgcattgttga |
129 |
Q |
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| T |
43970159 |
actacactgaagtggcaatagagagacgtaaataaagaaggagac--tggtggccaatgaacgacgcactacaaagctacgttgacggttgcattgttga |
43970256 |
T |
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| Q |
130 |
cggtacaa-cctctgattccctgtttctttaaggaattcttacattgtttgcttccaatctctcacttaatctaacacactgattacaatgattcctaat |
228 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
43970257 |
cggtacaaacctctgattccctatttctttaaggaattctcacattgtttgcttccaatctctcacttaatctcacacactaattacaatgattcctaat |
43970356 |
T |
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| Q |
229 |
tatagagttgtcactttgattcatcgtatttattttcccattcttcc |
275 |
Q |
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| T |
43970357 |
tatagagttgtcactttgattcatcgtatttatttttccattcttcc |
43970403 |
T |
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