View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-20 (Length: 70)
Name: Solexa-NF5870-20
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-20 |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2262029 - 2262092
Alignment:
| Q |
1 |
cacagacaaagaaagagtttatacaaacattgctaattcaaatgcgaaaaatttcactcctaaa |
64 |
Q |
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| T |
2262029 |
cacagacaaagaaagagtttatacaaacattgctaattcaaatgcgaaaaatttcactcttaaa |
2262092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2228775 - 2228731
Alignment:
| Q |
12 |
aaagagtttatacaaacattgctaattcaaatgcgaaaaatttca |
56 |
Q |
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|||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
2228775 |
aaagagtttatacaaacattgcaaattcagatgccaaaaatttca |
2228731 |
T |
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