View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-3 (Length: 224)
Name: Solexa-NF5870-3
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 8717215 - 8717037
Alignment:
| Q |
49 |
cctgaagcaatgcaattcaaacct---tacacggtaaaaacttcacatccgatgtcagcaacaaactgaacaaatcaatcacaaggaaataatttacttg |
145 |
Q |
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| T |
8717215 |
cctgaagcaatgcaattcaaacctccttacacggtaaaaacttcacatccgaagtcatcaacaaactgaacaaatcaaccacaaggaaataatttacttg |
8717116 |
T |
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| Q |
146 |
cttcaaaagcatctgaaaacatgaagtggattcgtccacctattcgagaagacaaagttcttgtttctacccgccctat |
224 |
Q |
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| T |
8717115 |
cttcaaaagcatcgtaaaacatgaagtggatttgtccacctatttgagaagacaaagttcttgtttctacccgccctat |
8717037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 8736016 - 8735897
Alignment:
| Q |
104 |
caacaaactgaacaaatcaatcacaaggaaataatttacttgcttcaaaagcatctgaaaacatgaagtggattcgtccacctattcgagaagacaaagt |
203 |
Q |
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| T |
8736016 |
caacaaactgaacaaatcaacaacacagaaacaatt-acttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagt |
8735918 |
T |
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| Q |
204 |
tcttgtttctacccgccctat |
224 |
Q |
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| T |
8735917 |
tcttgtttctactctccctat |
8735897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 8736146 - 8736087
Alignment:
| Q |
13 |
acagaactgaaacctcacattgtctccaccaagaaacctgaagcaatgcaattcaaacct |
72 |
Q |
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| T |
8736146 |
acagaaccgaaaccttacatcgtccccaccaatgaacctgaagcaatgcaattcaaacct |
8736087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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