View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-4 (Length: 176)
Name: Solexa-NF5870-4
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-4 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 8e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 8e-72
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 14746054 - 14746202
Alignment:
| Q |
8 |
gttacattagagaaagtgagaaactaacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggagttcttgaatatttagatttagagaa |
107 |
Q |
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| T |
14746054 |
gttacattagagaaagtgagaaactaacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggaattcttgaatatttagatttagagaa |
14746153 |
T |
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| Q |
108 |
agaaaagcacctctctgaaaggttatgtggctccagctgaatatatatt |
156 |
Q |
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| T |
14746154 |
acaaaagcacctctctaaaaggttatgtggctccagctgaatatatatt |
14746202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 14743051 - 14743179
Alignment:
| Q |
36 |
aaatagagaacaaagtacaagaaagaagaa-caccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatg |
134 |
Q |
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| T |
14743051 |
aaatagagaacaaagtacaagaaataagaaacaccttaagttttggagattttgaatatttagatttagagaaacaaaagcacctctc---------atg |
14743141 |
T |
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| Q |
135 |
tggctccagctgaatatatatttattaagtaacatcat |
172 |
Q |
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| T |
14743142 |
tcgctcctgctgaataaatatttattaattaacatcat |
14743179 |
T |
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