View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5870-5 (Length: 165)
Name: Solexa-NF5870-5
Description: NF5870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5870-5 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 37445255 - 37445101
Alignment:
| Q |
1 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagcaagtccctttgaaggtgtctannnnnn |
100 |
Q |
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| T |
37445255 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatgaatttaatttggcatgagcaagtccctttgaaggtgtcaatttttt |
37445156 |
T |
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| Q |
101 |
ncgtggaggcttctacgtgatagactaacaacaaaatcaaatttggcgatctgtg |
155 |
Q |
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| T |
37445155 |
tcgtggaggctgctacgtgatagactaccaacaaaatcaaatttggcgatctgtg |
37445101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 37437147 - 37436996
Alignment:
| Q |
4 |
gtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagcaagtccctttgaaggtgtctannnnnnncg |
103 |
Q |
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| T |
37437147 |
gtttgtgacatgctgacatcccaggagcatgcacacgttcaatcaagcatggatttaatttgacataagcaggtccctttgaaggtgtatatttttttcg |
37437048 |
T |
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| Q |
104 |
tggaggcttctacgtgatagactaacaacaaaatcaaatttggcgatctgtg |
155 |
Q |
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| T |
37437047 |
tggaggctgctacgtgatagactatcaacaaaatcaaatttggcgatatgtg |
37436996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31742413 - 31742345
Alignment:
| Q |
1 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcat |
69 |
Q |
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| T |
31742413 |
ggtgttgatgacatgctgacatcataggagcatgcaaaggttcaatcaagcatggatttaatttggcat |
31742345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 23874295 - 23874150
Alignment:
| Q |
3 |
tgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagcaagtccctttgaaggtgtctannnnnnnc |
102 |
Q |
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| T |
23874295 |
tgtttatgacatgctggcatccaagtagcatgcatcagtgcactcaaatatggaattaatttggcataatcaagtccctttgaaggtctcta-tttttgc |
23874197 |
T |
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| Q |
103 |
gtggaggcttctacgtgatagactaacaacaaaatcaaatttggcga |
149 |
Q |
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| T |
23874196 |
gtggaggctgcttcgtgatatattgccaacaaaatcaaacttggcga |
23874150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20532034 - 20532119
Alignment:
| Q |
1 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagcaagtccctttgaa |
86 |
Q |
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| T |
20532034 |
ggtgtttatgacatgctgacatcccatgagcatcctcatttacatcaaaatatggaattaatttggcataagaaggtccatttgaa |
20532119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 31742312 - 31742269
Alignment:
| Q |
103 |
gtggaggcttctacgtgatagactaacaacaaaatcaaatttgg |
146 |
Q |
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| T |
31742312 |
gtggagactactacgtgatagactaccaacataatcaaatttgg |
31742269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36363678 - 36363605
Alignment:
| Q |
1 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagca |
74 |
Q |
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| T |
36363678 |
ggtgtttatgacatgttgacatctcaggagcatgctcaagttcatccaagcatggatttaatttggcataagca |
36363605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5041670 - 5041584
Alignment:
| Q |
1 |
ggtgtttatgacatgctgacatcccaagagcatgcacatattcaatcaaacatggatttaatttggcatgagcaagtccctttgaag |
87 |
Q |
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| T |
5041670 |
ggtgtttatgacatgttgacatctcaagagcatgctcaagttcatccaagtatgaatttaatttggcataagcaggttcccttgaag |
5041584 |
T |
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